BarleyExpDB is a user-friendly, integrated, multifaceted RNA-seq database that allows users to conveniently retrieve gene expression from barley RNA-seq libraries and returns an intuitive visual display, accompanied by functional descriptions and annotations from GO, KEGG, PFAM, and SMART. Our database contains a total of 56 transcriptome studies, including 3,492 samples covering different developmental stages and tissues, biotic and abiotic stresses, and various mutants and populations (e.g., RIL and NIL). Details are listed in the table below. The platform also provides several useful toolkits implementing search, BLAST and download functions. We believe that BarleyExpDB will help make RNA-seq big data more accessible and available to the barley research community.
Note: The RNA-seq datasets were downloaded from the NCBI-SRA database to study the expression patterns of barley genes. Quality control was performed with Trimmomatic v0.36. Hisat2 v2.1.0 and StringTie v1.3.5 software were used to calculate fragments per kilobase of transcript per million mapped reads (FPKM) values for each gene with default parameters.
Summary of studies
| SRA BioProject | Title | Publication | NGS technology | Description |
|---|---|---|---|---|
| PRJEB14349 | RNA-Seq of 16 developmental stages of barley (Morex cultivar). | A chromosome conformation capture ordered sequence of the barley genome | Illumina HiSeq 2000 | Cereal grasses of the Triticeae tribe have been the major food source in temperate regions since the dawn of agriculture. Their large genomes are characterized by a high content of repetitive elements and large pericentromeric regions that are virtually devoid of meiotic recombination. Here we present a high-quality reference genome assembly for barley (Hordeum vulgare L.). We use chromosome conformation capture mapping to derive the linear order of sequences across the pericentromeric space and to investigate the spatial organization of chromatin in the nucleus at megabase resolution. The composition of genes and repetitive elements differs between distal and proximal regions. Gene family analyses reveal lineage-specific duplications of genes involved in the transport of nutrients to developing seeds and the mobilization of carbohydrates in grains. We demonstrate the importance of the barley reference sequence for breeding by inspecting the genomic partitioning of sequence variation in modern elite germplasm, highlighting regions vulnerable to genetic erosion. |
| PRJDB4754 | Hordeum vulgare Transcriptome or Gene expression. | Extreme Suppression of Lateral Floret Development by a Single Amino Acid Change in the VRS1 Transcription Factor | Illumina HiSeq 2500 | Total RNA was extracted from immature spikes at the awn primordium stage of cultivated barley (Hordeum vulgare L.). Total RNA was measured by using Agilent 2100 Bioanalyzer (Agilent Technologies, Technologies, PaloAlto, CA, USA) and used for construction of sequencing library. Strand-specific RNA libraries were prepared using the TruSeq Stranded mRNA Sample Prep Kit (Illumina) following the instructions in the TruSeq Stranded mRNA Sample Preparation Guide Rev.E (Illumina). Poly(A)-RNA was fragmented and single-strand and double-strand cDNA were synthesized. High-throughput sequencing was conducted using HiSeq 2500 (Illumina, San Diego, CA, USA). |
| PRJEB19243 | Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility. | Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility | Illumina HiSeq 2500 | The barley inflorescence (spike) comprises a multi-noded central stalk (rachis) with tri-partite clusters of uni-floretted spikelets attached alternately along its length. Relative fertility of lateral spikelets within each cluster leads to spikes with two or six rows of grain, or an intermediate morphology. Understanding the mechanisms controlling this key developmental step could provide novel solutions to enhanced grain yield. Classical genetic studies identified five major SIX-ROWED SPIKE (VRS) genes, with four now known to encode transcription factors. Here we identify and characterise the remaining major VRS gene, VRS3, as encoding a putative Jumonji C-type H3K9me2/me3 demethylase, a regulator of chromatin state. Exploring the expression network modulated by VRS3 reveals specific interactions, both with other VRS genes and genes involved in stress, hormone and sugar metabolism. We show that combining a vrs3 mutant allele with natural six-rowed alleles of VRS1 and VRS5 leads to increased lateral grain size and greater grain uniformity. |
| PRJEB21740 | RNA-seq of enriched barley stomatal complexes versus total leaves. | A Tandem Amino Acid Residue Motif in Guard Cell SLAC1 Anion Channel of Grasses Allows for the Control of Stomatal Aperture by Nitrate | Illumina HiSeq 3000 | We intend to identify transporters and their regulators involved in barley stomatal movement as well as components of the ABA signaling pathway. We isolated epidermal peels where only stomatal guard cells and their subsidiary cells survived, while other epidermal cell were mechanically disrupted and sequenced the resulting RNAs. Thus we analyzed transcripts differentially expressed between the barley stomatal complex and total leaves. These data served as the first overview of genes expressed in the stomatal complex and for cloning of relevant transporters. |
| PRJEB25969 | Transcriptome analysis on mature, non aged seeds of the spring barley landraces Cebada Capa and L94 and L94 NILs by RNA sequencing. | Genes for seed longevity in barley identified by genomic analysis on near isogenic lines | Illumina HiSeq 2000 | Widespread natural variation in barley offers an opportunity to study seed longevity in an important temperate cereal crop. For example, the spring barley landraces Cebada Capa (Argentina) and L94 (Ethiopia) display long and short-term seed longevity, respectively. We have used this contrast to identify and characterize seed longevity genes in barley by RNA sequencing analysis of mature, non aged seeds of Near Isogenic Lines (NILs) with a L94 background but harboring introgressions from Cebada Capa in four putative QTLs on chromosomes 1H and 2H. |
| PRJNA275710 | Next generation sequencing reveals gene transcription activities and alternative splicing events in germinating barley embryos. | Involvement of Alternative Splicing in Barley Seed Germination | Illumina HiSeq 2000 | Seed germination triggers a transition of growth and metabolic activities from quiescent to active statuses. Germinating seeds is a good system to study many biological and biochemical processes including hormone metabolic activities and cell wall biosynthesis. Next generation sequence technology is used to study these processes. We have examined gene transcription activities and alternative splicing events in germinating embryos Overall design: We dissected barley embryos from four barley varieties at 2 time points 24 h and 48 h. |
| PRJNA378334 | Leaf transcriptome sequencing of several barley accessions. | An ancient integration in a plant NLR is maintained as a trans-species polymorphism | Illumina HiSeq 2500 | RNAseq was performed on several barley accessions that vary for their reaction to wheat stripe rust (Puccinia striiformis f. sp. tritici) to identify markers and understand the gene content at the Rps7 (Resistant to Puccinia striiformis f. sp. tritici 7) locus. The majority of accessions were sequenced at 100 bp paired end, except CI 16147 which had 150 bp paired end reads. RNAseq read quality was assessed and trimmed using Trimmomatic (version 0.32) with the parameters ILLUMINACLIP:2:30:10, LEADING:3, TRAILING:3, SLIDINGWINDOW:4:15, and MINLEN:100. Transcriptome assembly was performed using Tophat (version 2013-11-10) with default parameters. |
| PRJNA378723 | Leaf transcriptome sequencing and assembly of several barley accessions. | An ancient integration in a plant NLR is maintained as a trans-species polymorphism | Illumina HiSeq 2500 | RNAseq was performed on several barley accessions to understand their diversity, with an emphasis on the class of plant immune receptors that contain nucleotide-binding, leucine-rich repeats (NB-LRR). The accessions were sequenced at either 100 bp or 150 bp paired end, except CI 16147 which had 150 bp paired end reads. RNAseq read quality was assessed and trimmed using Trimmomatic (version 0.32) with the parameters ILLUMINACLIP:2:30:10, LEADING:3, TRAILING:3, SLIDINGWINDOW:4:15, and MINLEN:100. Transcriptome assembly was performed using Tophat (version 2013-11-10) with default parameters. |
| PRJNA396950 | RNA sequencing of Hordeum vulgare near-isogenic lines. | Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. | Illumina HiSeq 2500 | RNA sequencing of ILs of vrs1, vrs3, vrs4 and int-c.5 in cv. Bowman Purpose: Expression analysis and variant calling Overall design: Enriched apical meristem tissue was isolated at Waddington stage (W) 3.5 and W5.0. The samples were harvested at the middle of the day, 6 to 8 h before the end of the light period. |
| PRJNA428086 | Differential expression profiling of microspores during the early stages of isolated microspore culture in barley using the embryogenic-responsive cultivar Gobernadora. | Differential Expression Profiling of Microspores During the Early Stages of Isolated Microspore Culture Using the Responsive Barley Cultivar Gobernadora | Illumina HiSeq 2000 | mRNA library from Illumina TrueSeq; Barley (Hordeum vulgare ssp. vulgare; cv. Gobernadora) starting material in barley androgenesis: uninucleate and haploid microspores (Day 0), microspore after stress pre-treatment (Day 2) and microspore after three days in embryogenesis culture (Day 5). |
| PRJNA496380 | Barley seed germination. | Temporal tissue-specific regulation of transcriptomes during barley (Hordeum vulgare) seed germination | NextSeq 500 | To investigate cell-type specific genome regulation during germination, we have applied laser-capture microdissection RNA sequencing to three tissues of barley seeds that have distinct functions (plumules, radicles and scutellum). |
| PRJNA558196 | Hordeum vulgare anther and meiocyte transcriptome. | Barley Anther and Meiocyte Transcriptome Dynamics in Meiotic Prophase I | Illumina NextSeq | We performed Illumina sequencing of cytologically staged isolated barley anthers at four differend timepoints and purified meiocytes and two different timepoints. We also included three IsoSeq PacBio libraries from a mixture of the above stages. |
| PRJEB39672 | Transcriptional landscape of floral meristem fates in barley. | Transcriptional landscapes of floral meristems in barley | Illumina HiSeq 2500 | Laser capture microdissection (LCM)-based RNA-seq of barley spike tissues. Inflorescence meristems (IM), leaf ridges (LR) and spikelet ridges (SR), central (CS) and lateral spikelets (CS) were isolated at six initial stages of barley spike development ranging from double ridge (DR) to awn primordium (AP) stage. Control samples of vegetative meristems (vegetative apex (VA), root apical meristem (RAM), leaf blade (LB)) and different growth conditions (shading/stress) are also included in the data set for comparison to spike tissues. Four biological replicates were generated from each tissue-type (exception of triplicate samples for vegetative meristems) resulting in 209 RNA-seq samples. |
| PRJEB12540 | RNAseq transcriptome assembly and expression profiling of a drought-control experiment with barley cultivar Scarlett and Spanish landrace SBCC073. | Large Differences in Gene Expression Responses to Drought and Heat Stress between Elite Barley Cultivar Scarlett and a Spanish Landrace | Illumina HiSeq 2000 | Plants from barley cultivar Scarlett and barley Spanish landrace SBCC073 were grown until maturity in both greenhouse and growth chamber. Then, plants were irrigated every two days to maintain 70 and 20% RWC in the growth chamber and 50% RWC in the greenhouse. Samples from leaves and developing flowers were obtained after one month of treatment. RNA was obtained from 2 or 3 biological replicates of both genotypes, tissues and treatments. RNA from a total 28 samples was sequenced in a single Illumina Hiseq 2000 flowcell. |
| PRJEB13621 | A study of transcriptome response to salt treatment across three zones of the root in a barley landrace and malting cultivar | De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure | Illumina HiSeq 2000 | Paired-end RNA-Seq libraries were constructed for three root sections of the roots of barley cv. Clipper, and landrace Sahara, grown under control and salt-treated (100 mM NaCl) conditions on agar plates in quadruplicate. Experiments were conducted in a temperature-controlled growth cabinet at 17 °C in the dark. After three days of germination, seminal roots were dissected according to the following steps: A 1.5 mm long section marked ‘Zone 1’ (meristematic zone) was taken from the root tip. A second section (‘Zone 2’) was dissected from the elongation zone up to a third section, ‘Zone 3’ (maturation zone), which was excised at the point of visible root hair elongation up to 3⁄4 of the entire root. Four biological replicates were generated for each sample in four separate experiments totaling 48 samples. All RNA-seq libraries were constructed and paired-end sequenced (100 bp) on an Illumina HiSeq 2000 system at the Australian Genome Research Facility (Melbourne, Australia). |
| PRJEB18276 | Transcriptional responses to cold in five Pooideae species | Evolution of Cold Acclimation and Its Role in Niche Transition in the Temperate Grass Subfamily Pooideae | Illumina HiSeq 2000 | To investigate the evolution of cold response in Pooideae, five species spanning early to later diverging lineages were sampled before and after subjecting them to a drop in temperature (17°C to 6°C), shorter days (12 to 8 hours of light) and less intensive light. Short-term response was sampled in the afternoon 8 hours after drop in temperature but 24 hours after the respective control sample to control for diurnal rhythm. Long-term response was sampled after 4 and 9 weeks in the morning directly after lights were turned on with a respective control sample also taken in the morning on the day before the temperature drop. |
| PRJEB40905 | Comparative hormonal and expression analyses of two barley genotypes with contrasting drought tolerance. | The Effect of Drought on Transcriptome and Hormonal Profiles in Barley Genotypes With Contrasting Drought Tolerance | Illumina NovaSeq 6000 | Barley is negatively impacted by drought stress. In this study, comparative hormonal and expression profiling were conducted between drought tolerant and drought sensitive barley genotypes. The results revealed less changes in the expression profile of the tolerant genotype compared to the sensitive genotype. The expression level of some drought tolerance genes was higher in the drought tolerant genotype compared to the sensitive genotype. Moreover, few drought tolerance genes were uniquely and highly induced in the drought tolerant genotype. These results shed light into new mechanisms of drought tolerance in barley. This will deepen our understanding of the complex drought response in barley, and will help in the improvement of drought tolerant barley genotypes. |
| PRJEB8748 | Expression profiling of developing barley main shoot apices and leaves during the vegetative phase and early inflorescence development in response to the photoperiod and natural allelic variation at Ppd-H1 | Global Transcriptome Profiling of Developing Leaf and Shoot Apices Reveals Distinct Genetic and Environmental Control of Floral Transition and Inflorescence Development in Barley | Illumina HiSeq 2000 | The timing of reproductive development determines spike architecture and thus yield in temperate grasses such as barley (Hordeum vulgare L.). Reproductive development in barley is controlled by the photoperiod response gene Ppd-H1 which accelerates flowering time under long-day (LD) conditions. A natural mutation in Ppd-H1 prevalent in spring barley causes a reduced photoperiod response, and thus, late flowering under LD. However, it is not very well understood how LD and Ppd-H1 control pre-anthesis development, and thus spike architecture and yield in barley. We performed a detailed morphological analysis of the pre-anthesis development in the spring barley cultivar Scarlett and its wild barley derived introgression line S42-IL107, carrying the photoperiod responsive Ppd-H1 allele. Characterization of shoot apex development in these genotypes indicated that floral transition and initiation of floral primordia occurred under LD (16h light/ 8h dark) and short day (SD, 8h light/ 16h dark) conditions, while inflorescence and seed development strictly required LDs. Additionally, a fast photoperiod response in the presence of the dominant Ppd-H1 allele promoted floret fertility under LDs. To characterize the effects of the photoperiod and allelic variation at Ppd-H1 on gene expression during pre-anthesis development we performed RNA sequencing of leaves and developing main shoot apices during the vegetative phase and early stages of inflorescence development in Scarlett and S42-IL107 grown under SD and LD conditions. Main shoot apices of both genotypes were sampled at defined developmental stages, i.e. Waddington stage W0.5, W1.0, W2.0 and W3.5, respectively. Leaf samples were harvested from plants before (W1.0) and after floral transition (W2.0). We identified genes that were specifically regulated at floral transition independent of day-length and Ppd-H1 and thus may serve as markers for the staging of floral transition. Furthermore, we identified transcripts differentially expressed between photoperiods and between genotypes in leaves and in shoot apices. This set of transcripts might act as candidates downstream of Ppd-H1 and are correlated with the promotion of shoot apex development and higher floret fertility under LD and in the presence of the photoperiod responsive Ppd-H1 allele. |
| PRJNA294716 | Hordeum vulgare cultivar:M69, Lacey and Chevron Transcriptome or Gene expression. | Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance | Illumina HiSeq 2500 | Fusarium graminearum infects barley spikes and causes Fusarium head blight (FHB), a major disease problem worldwide. Resistance to FHB is partial and controlled by quantitative trait loci (QTL) of which two are located on barley chromosomes 2H bin8 (2Hb8) and 6H bin7 (6Hb7). To understand the molecular mechanisms of FHB resistance, transcriptomes of near-isogenic lines (NILs) carrying Chevron-derived resistant alleles for the two QTL and recurrent parents (M69 and Lacey) were investigated with RNA sequencing after F. graminearum or mock inoculation. A total of 2,083 FHB-responsive transcripts were detected and provide a gene expression atlas for the barley-F. graminearum interaction. Comparative analysis of the 2Hb8 resistant (R) NIL and M69 revealed that the 2Hb8 R NIL exhibited an elevated defense response in the absence of fungal infection and responded quicker than M69 upon fungal infection. The 6Hb7 R NIL displayed a more rapid induction of a set of defense genes than Lacey during the early stage of fungal infection. Overlap of differentially accumulated genes were identified between the two R NILs, suggesting that certain defense mechanisms may represent basal resistance to F. graminearum and/or general biotic stress response and were co-regulated by the two QTL. Long noncoding RNAs (lncRNAs) have emerged as potential key regulators of transcription. A total of 12,366 lncRNAs were identified of which 604 were FHB responsive. The current transcriptomic analysis revealed the differential mechanisms conferred by two QTL in response to F. graminearum infection and identified genes and lncRNAs that were associated with FHB resistance. |
| PRJNA315041 | Hordeum vulgare subsp. vulgare cultivar:Morex Transcriptome or Gene expression | RNA-seq reveals few differences in resistant and susceptible responses of barley to infection by the spot blotch pathogen Bipolaris sorokiniana | Illumina HiSeq 2000 | The purpose of this study was to characterize the transcriptomic response of Morex (which carries durable resistance to Cochliobolus sativus Isolate ND85F) to a susceptible Morex mutant. |
| PRJNA324116 | RNA-seq (strand-specific library) of barley shoots and roots from control and heat conditions. | Heat Stress Affects Pi-related Genes Expression and Inorganic Phosphate Deposition/Accumulation in Barley | Illumina HiSeq 2000 | Samples were collected after 1 h of the heat treatment. Samples were collected for control and heat stressed plants. Overall design: RNA-seq was performed for shoot (in triplicate for each condition) and root (in duplicate for each condition). |
| PRJNA378582 | RNA research on glucan content of hulless barley | EORNA, a barley gene and transcript abundance database | HiSeq X Ten | Identification of glucan content related genes by RNA-Seq. |
| PRJNA382490 | Transcriptome of barley under three different heavy metal stress conditions. | Transcriptome of barley under three different heavy metal stress reaction | Illumina HiSeq 2000 | The aim of the study is to identify gene regulated by three heavy metal: copper, zinc and cadmium. |
| PRJNA400519 | Hordeum vulgare Raw sequence reads. | Reference gene selection for quantitative RT-PCR normalisation in barley under low-nitrogen stress, based on RNAseq data | Illumina HiSeq 2000 | RNA sequencing of Hordeum vulgare L. under low nitrogen stress. |
| PRJNA430281 | RNA-seq transcriptome profiling of barley under Pi starvation and recovery conditions | Molecular Mechanisms of Acclimatization to Phosphorus Starvation and Recovery Underlying Full-Length Transcriptome Profiling in Barley (Hordeum vulgare L.) | HiSeq X Ten | RNA-seq transcriptome profiling of barley under Pi starvation and recovery conditions |
| PRJNA439267 | Barley seminal root zone specific gene expression in response to water deficit. | Osmotic stress enhances suberization of apoplastic barriers in barley seminal roots: analysis of chemical, transcriptomic and physiological responses | Illumina HiSeq 4000 | Barley seminal roots were divided into three zones according their developmental stage. Transcript changes by RNA-seq in response to water deficit were measured. |
| PRJNA755156 | BaRTv2: A highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification. | BaRTv2: A highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification | Illumina NovaSeq 6000 | BaRTv2 represents a new and improved Reference Transcript Dataset built upon a broad framework of highly informative Pacbio Iso-seq full length transcripts incorporating accurate SJ, TSS and TES information. It is based upon the European 2-row spring barley cv. Barke which itself is highly relevant to contemporary barley agriculture and current research. The combination of the novel Iso-seq analysis and filtering pipeline, the new automated quality control pipeline for short read assembled transcripts and detailed transcript characterisation and annotation make BaRTv2 a high-quality community-wide reference dataset. |
| PRJNA566107 | Low nitrogen tolerance related study in barley. | Novel low-nitrogen stress-responsive long non-coding RNAs (lncRNA) in barley landrace B968 (Liuzhutouzidamai) at seedling stage | HiSeq X Ten | Reducing the dependence of crop production on chemical fertilizer with its associated costs, carbon footprint and other environmental problems is a challenge for agriculture. New solutions are required to solve this problem, and crop breeding for high nitrogen use efficiency or tolerance of low nitrogen availability has been thought to be a promising approach. However, the molecular mechanisms of high nitrogen use efficiency or low-nitrogen tolerance in crop plants are still to be elucidated, including the role of long non-coding RNAs. |
| PRJNA602700 | Genome-Wide analysis of gene expression responses to waterlogging stress in roots of barley (Hordeum vulgare L.) | Genome-Wide Analysis of Gene Expression Provides New Insights into Waterlogging Responses in Barley (Hordeum vulgare L). | Illumina HiSeq 4000 | Waterlogging is a major abiotic stress causing oxygen depletion and carbon dioxide accumulation in the rhizosphere. Barley is more susceptible to waterlogging stress than other cereals. To gain a better understanding of the effect of waterlogging stress in barley, we carried out a genome-wide gene expression analysis in roots of Yerong and Deder2 barley genotypes under waterlogging and control (well-watered) conditions by RNA-Sequencing, using Illumina HiSeq 4000 platform. Overall design: Two-week-old Yerong and Deder2 seedlings were exposed to waterlogging treatment. Root tissue samples were collected at the time-points 0 and 72 h of treatment for Yerong from both treated and control plants, and at the points 0, 72, and 120 h of treatment for Deder2 from both treated and control plants. Total RNA was prepared and used for the RNA-seq analysis. Four independent biological replicates were used for each plant sample. |
| PRJNA704034 | Transcriptome analysis of barley root meristem under Al and low pH stress. | Aluminum or Low pH – Which Is the Bigger Enemy of Barley? Transcriptome Analysis of Barley Root Meristem Under Al and Low pH Stress | Illumina HiSeq 4000 | Aluminum (Al) is the most common metal in the Earth’s crust and Al toxicity is considered to be the most harmful abiotic stress in acidic soils that today comprise more than 50% of the world’s arable lands. The first symptom of Al toxicity is the reduction of root growth, resulting in decreased water and nutrients uptake, plant growth retardation, and finally, yield reduction. Barley (Hordeum vulgare L.), which is the fourth cereal crop in regards to cultivation area and production tonnage, belongs to crops most sensitive to toxic aluminum ions in low pH soils. We present the RNA-seq transcriptome analysis of root meristems of barley seedlings grown in hydroponics at optimal pH (6.0), low pH (4.0), and low pH with Al (10 µM of bioavailable Al3+ ions). Two independent experiments were conducted: with short-term (24 h) and long-term (7 days) Al treatment. Interestingly, in the short-term experiment, more genes were differentially expressed between root meristems grown at pH=6.0 and pH=4.0, than between those grown at pH=4.0 with and without Al treatment. The upregulated genes that were overrepresented at conditions of low pH, compared to optimal pH, were associated with response to oxidative stress, cell wall organization, and iron ion binding. Among genes downregulated by low pH were mainly those related to chromatin organization. These results show that low pH itself is a severe stress for barley plants. Among genes upregulated by short Al treatment, overrepresented were those related to response to stress condition and calcium ion binding. After 7 days of hydroponics, the number of DEGs between hydroponics at pH=4.0 and 6.0 were still high but lower than in the short-term experiment, which suggests that plants partially adapted to the low pH. Interestingly, 7 day Al treatment caused massive changes in the transcriptome profile compared to the condition of low pH alone. Over 4 000 genes were upregulated and almost 2 000 genes were downregulated by long-term Al stress. These DEGs were related to e.g. stress response, cell wall development and metal ion transport. Based on our results we can assume that both, Al3+ ions and low pH are harmful to barley plants.Additionally, we phenotyped in detail the root system of barley seedlings grown in the same hydroponic conditions for 7 days at pH=6.0, pH=4.0, and pH=4.0 with Al. The results correspond to transcriptomic data and show that low pH itself is a stress facor that causes a significant reduction of root growth and the addition of aluminum further increases this reduction. It should be underlined that in the acidic arable lands, plants are exposed simultaneously to both of these stresses (low pH and Al), as Al becomes soluble at pH below 5.5. The presented transcriptome analysis may help to find potential targets for breeding barley plants more tolerant to such conditions. Overall design: We examined the influence of low pH and aluminum on transcriptome of barley root meristems in two independent hydroponic experiments (short- and long-term). Root meristems from at least 8 plants from one hydroponic container were considered as one repetition (with an average of 5 root meristems per plant). Each experimental combination (optimal pH=6, low pH=4 and Al treated) was analyzed in three replicates in both experiments. |
| PRJNA728113 | Transcriptome alterations of an in vitro-selected, moderately-resistant, two-row malting barley in response to 3ADON, 15ADON and NIV chemotypes of Fusarium graminearium. | Transcriptome Alterations of an in vitro-Selected, Moderately Resistant, Two-Row Malting Barley in Response to 3ADON, 15ADON, and NIV Chemotypes of Fusarium graminearum | Illumina HiSeq 4000 | Fusarium head blight caused by Fusarium graminearum is a devastating disease of malting barley. Mycotoxins associated with contaminated grain can be transferred from malt to beer and pose a health risk to consumers. In western Canada, F. graminearum has undergone an adaptive shift from 15ADON constituency to dominance by virulent 3ADON-producers, likewise NIV-producers have established in regions of southern United States. Lack of adapted resistance sources with adequate malting quality has promoted the use of alternative breeding methodologies such as in vitro selection. We studied the low-deoxynivalenol characteristic of in vitro selected, two-row malting barley variety ‘Norman’ by RNAseq in contrast to its parental line ‘CDC Kendall’, when infected by 15ADON-, 3ADON- and NIV-producing isolates of F. graminearum. The current study documents higher mycotoxin accumulation by 3ADON isolates, thereby representing increased threat to barley production. At 72-96 hours post infection, significant alterations in transcription patterns were observed in both varieties with pronounced upregulation of the phenylpropanoid pathway and detoxification gene categories (UGT, GST, CyP450 and ABC) particularly in 3ADON treatment. Defense response was multi-tiered, where differential expression in ‘Norman’ associated with antimicrobial peptides (thionin 2.1, defensing, non-specific lipid-transfer protein) and stress-related proteins such as late embryogenesis abundant proteins, heat-shock, desiccation-related and a peroxidase (HvPrx5). Several gene targets identified in ‘Norman’ would be useful in application of breeding varieties with reduced deoxynivalenol content. Overall design: Adult plants of Norman and CDC Kendall were sprayed with macroconidia (5 x 10^4 spores ml-1) of Fusarium graminearum (3ADON, 15ADON and NIV chemotypes + mock control). Seed tissue samples were collected at the time-points 72 h and 96h post-inoculation for Norman and CDC Kendall from all Fusarium treated and control plants. Total RNA was prepared and used for the RNA-seq analysis. Three independent biological replicates were sampled. |
| PRJNA744693 | RNA-seq analysis of barley leaves responding to waterlogging stress. | Cultivar-, stress duration- and leaf age-specific hub genes and co-expression networks responding to waterlogging in barley | Illumina HiSeq 2500 | cultivar-, waterlogging stage- and leaf age- specific hub genes and regulatory networks in baley leaves were revealed under waterlogging stress. |
| PRJEB4947 | Illumina sequencing of RNA from 14 wild barley samples (Hordeum spontaneum). | A walk on the wild side: mining wild wheat and barley collections for rust resistance genes | Illumina Genome Analyzer II | In this study 14 wild barley samples (Hordeum spontaneum) from the World Barley Diversity Collection (WBDC) were selected to represent as much as possible of the full diversity for the wild species. Seeds were grown at room temperature in the dark. After 4 days post-germination, embryonic tissue (coleoptile, mesocotyl and seminal roots) was dissected and flash-frozen. Total RNA was extracted and cDNA prepared. Sequencing was carried out on an Illumina GAII instrument using standard TruSeq RNA (Illumina) library generation, with single-end 75bp reads obtained from a single lane for each sample. The following samples were used: WBDC032, WBDC115, WBDC170, WBDC182, WBDC255, WBDC319, WBDC344, WBDC016, WBDC035, WBDC142, WBDC173, WBDC227, WBDC307, WBDC336. |
| PRJNA261456 | Hordeum vulgare Transcriptome or Gene expression. | Transcriptome profiling reveals mosaic genomic origins of modern cultivated barley | Illumina HiSeq 2000 | We hypothesized that the genome segments of cultivated barley should show certain similarity with its ancestral wild barley. Instead of whole genome sequences, we employed RNA-Seq to investigated the genomic origin of modern cultivated barley using some representative wild barley genotypes from the Near East and Tibet, and representative world-wide selections of cultivated barley. |
| PRJNA507455 | Hordeum spontaneum Genome Sequencing Using RNA Seq. | - | Illumina HiSeq 2500 | Ten populations of wild barley (Hordeum spontaneum) were collected 28 years apart. Single nucleotide polymorphisms (SNPs) were detected using RNA Seq sequences. Focus was placed on those SNPs that were deleterious and associated with the two sample times to examine the change in diversity over time. |
| PRJNA665933 | Transcriptome analysis of leaves and roots in 10 wild barley from Tabigha Evolution Slope. | Multi-Omics Analysis Reveals the Mechanism Underlying the Edaphic Adaptation in Wild Barley at Evolution Slope (Tabigha) | Illumina HiSeq 4000 | Transcriptome analysis of leaves and roots in 10 wild barley from Tabigha Evolution Slope. |
| PRJNA744021 | Transcriptome raw data of 29 barley samples | Transcriptome and Metabolite Insights into Domestication Process of Cultivated Barley in China | HiSeq X Ten | Barley RNA-SEQ for evolution. |
| PRJNA491382 | Transcriptome analysis of barley epidermal cells under drought stresses | Overexpression of HvAKT1 improves drought tolerance in barley by regulating root ion homeostasis and ROS and NO signaling | Illumina HiSeq 2500 | Comparative transcriptomic study with two wild barley genotypes X5 & X54 |
| PRJNA629999 | Genomic Evolution of Drought Adaptive Stomata of Wild Cereals | - | Illumina HiSeq 2500 | Drought is a major environmental stress threatening biodiversity and human civilization. Grasses cover more than 40% of the world land area and provide habitats for many animal species and represent the main source of grain and forage. Securing staple food for humans and animal feed (e.g. Wheat and barley) by future crop improvement depends on wild progenitors of cereal crops. However, the ecological and evolutionary significance of their wild relatives was not comprehensively studied in an integrated physiological, transcriptomic and genomic framework. Here, we assessed the genetic basis of adaptation and quantified the selection pressures that act on natural variation in wild barley (Hordeum spontaneum), wild emmer wheat (Triticum dicoccoides), and Brachypodium collected from contrasting African Slope and European Slope of the Evolution Canyon I, Israel. We report that hot-dry savannoid tropical African Slope contrasting with the abutting cool humid temperate European slope, has shaped the distinct stomatal and photosynthetic traits of H. spontaneum, T. dicoccoides and Brachypodium, which have strong genomic and transcriptomic basis for stomatal regulation, photosynthesis, and drought tolerance. Moreover, polyploidy may provide drought adaptive advantages to tetraploid B. hybridum at African Slope. We highlight the value of evaluating wild relatives in search of novel alleles and provides clues to resilience mechanisms underlying crop adaptations to abiotic stress. This study will provide useful information for the breeding of resilient wheat and barley in a changing global warming climate with higher temperature and more frequent drought events. |
| PRJNA748178 | Hordeum vulgare breed:wild barley Genome sequencing and assembly | HvGST4 enhances tolerance to multiple abiotic stresses in barley: Evidence from integrated meta-analysis to functional verification | Illumina NovaSeq 6000 | High-quality genome sequencing and assembly of 2 wild barley from Evolutionary Canyon. And the transcriptome data of these 2 wild barley under drought stress. |
| PRJNA828098 | HvbZIP21, a Novel Transcription Factor From Wild Barley Confers Drought Tolerance by Modulating ROS Scavenging | Illumina NovaSeq 6000 | the RNA-seq data of cultivated and wild barley | |
| PRJNA432492 | Hordeum vulgare subsp. spontaneum Transcriptome or Gene expression | Subfamily-Specific Specialization of RGH1/MLA Immune Receptors in Wild Barley | Illumina HiSeq 2500 | To allow for a more exhaustive assessment of Mla (mildew resistance locus A ) sequence diversity, we here used transcriptome sequencing and assembly to identify Mla sequences from a set of 50 wild barley (Hordeum spontaneum) accessions representing nine populations distributed throughout the Fertile Crescent. |
| PRJNA679445 | Sequencing of wild and cultivated barley leaves under osmotic stress sensed by roots | Cuticular transpiration is not affected by enhanced wax and cutin amounts in response to osmotic stress in barley | Illumina HiSeq 4000 | Leaf 2 of wild barley (ICB181243 originating from Pakistan) and cultivar Scarlett subjectect to control or -0.8 MPa osmotic stress were sequenced (RNA-seq). |
| PRJNA227211 | Hordeum vulgare ssp. spontaneum RNA-seq | Stepwise signal transduction cascades under salt stress in leaves of wild barley (Hordeum spontaneum) | Illumina HiSeq 2000 | Hordeum vulgare ssp. spontaneum RNA-seq |
| PRJNA489775 | Transcriptome profiles of salt treated roots of H.brevisubulatum and H.vulgare Transcriptome | - | Illumina HiSeq 2500 | Total RNA was isolated from root tissue of H. brevisubulatum and H. vulgare with RNAprep Pure Plant Kit (Tiangen Biotech Co., Ltd.)，transcriptome libraries were constructed using Ribo-Zero-rRNA Removal Kits (Plant/Bacteria) (Illumina, San Diego, CA, USA) and NEBNext® Ultra™ RNA Library Prep Kit for Illumina (New England Biolabs), sequence was generate on Illumina Hiseq 2500 sequencer instrument |
| PRJNA543388 | Wild Barley (ICB181243) root zone specific RNA-Seq in response to water deficit | Seminal roots of wild and cultivated barley differentially respond to osmotic stress in gene expression, suberization, and hydraulic conductivity | Illumina HiSeq 4000 | Wild barley (ICB181243 originating from Pakistan) seminal roots were divided into three zones according their developmental stage. Transcript changes by RNA-seq in response to water deficit were measured. |
| PRJNA728483 | Gene expression analysis of qingke under the normol condition and Powdery mildew treatment | Resistance to Powdery Mildew in Qingke Involves the Accumulation of Aromatic Phenolamides Through Jasmonate-Mediated Activation of Defense-Related Genes | Illumina HiSeq 4000 | Powdery mildew (PM) is a serious disease for barley, leads to severe yield reduction and constantly poses significant threats to further agricultural sustainability and food security in worldwide. To explore the molecular mechanism and regulatory networks of resistance against powdery mildew in qingke. RNA sequencing and proteome data of powdery mildew-sensitive (G72) and powdery mildew-resistant (K69) accessions in a time course experiment to systemtically explore the mechanisms resistance to powdery mildew in qingke. |
| PRJNA546269 | Transcriptomic and alternative splicing analyses reveal mechanisms of the difference in salt tolerance between barley and rice. | Transcriptomic and alternative splicing analyses reveal mechanisms of the difference in salt tolerance between barley and rice | Illumina HiSeq 2500 | Both barley (Hordeum vulgare) and rice (Oryza sativa) belong to Poaceae family, but differ greatly in salt tolerance. In order to understand molecular mechanisms in the difference of salt tolerance between the two species, the responses of transcriptomic profiles to salt stress were compared between rice (cultivar Nipponbare) and barley (accession XZ26) to reveal how alternative splicing (AS) coordinates with transcriptional regulation in adaptation to salt stress. Physiological study showed that XZ26 had higher salt tolerance than Nipponbare, as reflected by less growth inhibition, lower shoot Na+ concentration and higher K+/Na+ ratio when exposed to salt stress. Transcriptomic analysis showed that XZ26 had higher ROS scavenging ability, less degradation of protein kinases and enhanced anti-oxidation. Moreover, AS genes related to ion transporter genes and transcription factors could enhance and amplify K+/Na+ homeostasis and signal transduction cascades. We proposed that higher salt tolerance of barley accession XZ26 is attributed to its superior K+/Na+ homeostasis, tissue detoxication and less energy consumption. The present results provide insights at transcriptomic levels into reasons why barley has higher salt tolerance than rice. Overall design: After 7 d of salt treatments, fresh roots and the latest completely expanded leaves of barley (XZ26) and rice (Nipponbare) were sampled from both salt treatment and control, and immediately stored in liquid nitrogen for further transcriptomic analysis. Three biological replicates were done. |
| PRJEB21096 | RNA-Seq data analysis of Hordeum vulgare cv. Morex transcriptome to study photomorphogenesis. | - | Illumina HiSeq 2000 | Hordeum vulgare is one of the first domesticated grains in the world and it has been reported that variations in the light environment have a substantial effect on barley plant development and biological processes. High-throughput RNA-Seq study was performed to investigate the complex transcriptome network required for photomorphogenesis in barley. Seedlings were grown in dark and light conditions and three biological replicates were sampled from each condition. Six libraries from poly-A rich mRNA fraction were subjected to 51bp single-end RNA-seq sequencing. |
| PRJEB50400 | RNA-seq of part of the root system of barley genotypes grown in an agricultural soil under controlled conditions. | - | Illumina NovaSeq 6000 | This is a comparative experiments of three barley genotypes harbouring allelic differences at a locus designated QRMC-3HS putatively implicated in the assembly of the microbial communities thriving at the root-soil interface, the so called rhizosphere microbiota. The RNA-seq experiment aimed at identify genes differentially regulated among the genotypes at the locus of interest. As the selected genotypes host contrasting microbiotas, we hypothesised that differentially expressed genes at the locus represent primary candidates for the trait of interest (i.e., microbiota recruitment). |
| PRJNA781996 | Transcriptome and physiology of salt tolerance in barley. | - | Illumina HiSeq 2500 | Barley is used as a model cereal to decipher salt tolerance mechanisms, due to its simpler genome than wheat and better salt tolerance compared to rice and wheat. An enhanced understanding of molecular mechanisms underlying salt tolerance is essential for the genetic improvement of crops. The keen comparative RNA-Seq study to elucidate the molecular mechanisms underlying the adaptive strategies used by wild barley genotype to combat salt stress when compared with the salt-sensitive barley cultivar in this article will have something to offer a wide range of readers interested in. Physiological and functional outcomes were assessed as a function of salt stress and several mechanisms were advanced to explain the observed effects in contrasting barley genotypes. |
| PRJEB51523 | Barley apical spikelet abortion transcriptome. | - | Illumina NovaSeq 6000 | In barley (Hordeum vulgare), the indeterminate inflorescence meristem produces spikelet primordia along its axis and aborts a few terminally produced ones. In order to study the transcriptional changes involved in apical abortion of barley inflorescence, tissue-specific RNA-seq was performed at three early developmental stages by dividing the spikes into three parts, viz., apical, central, and basal. In two-rowed barley cv. Bowman, spikes were sampled at W5.0, W6.5, and W7.5 stages, whereas W5.5, W6.5 and W8.25 stages were collected from six-rowed barley cv. Morex. Three biological replicates were generated from each tissue type resulting in 54 RNA-seq samples. |
| PRJNA767196 | The RNA-seq datasets of monocot and eudicot plants under cold stress (4 degrees centigrade) at 0, 2, 24, and 168 hours (h). | Innovations and stepwise evolution of CBFs/DREB1s and their regulatory networks in angiosperms | Illumina NovaSeq 6000 | We performed RNA-seq experiments with the leaf tissues from five monocots (Setaria italica, Zea mays, Hordeum vulgare, Oryza sativa, and Phyllostachys edulis) and six eudicots (Betula pendula, Carya illinoinensis, Glycine max, Cucumis sativus, Populus trichocarpa, and Arabidopsis thaliana) subjected to cold treatment (4 degrees centigrade) for 0, 2, 24, and 168 hours (h). Before cold stress treatment, all the plant seedlings were cultured in an artificial climate chamber with 25 degrees centigrade at a photoperiod of 16/8 h light/dark cycle. For A. thaliana, three-week old seedlings were used for cold stress treatments. For other species, young seedlings growing up to ~30 cm in height were utilized. Total RNA of the leaves collected from each species was isolated, purified, and assessed by NanoDrop ND-1000 and Bioanalyzer 2100. Poly(A)-RNA was enriched for cDNA library construction and sequencing by Illumina NovaSeq 6000 (2 x 150 bp paired-end reads). |
| PRJNA752285 | Transcriptomic analysis of differentially expressed genes during the floret opening in barley. | Highly Conserved Evolution of Aquaporin PIPs and TIPs Confers Their Crucial Contribution to Flowering Process in Plants | Illumina HiSeq 2500 | RNA-seq analysis in eight tissues and six stages during the floret opening in barley. |
| PRJEB34648 | RNA-seq of leaf tissue of barley cultivar Bowman and three derived introgression lines. | - | Illumina HiSeq 2500 | In order to understand effects of defective circadian clock on the global barley transcriptome, we analyzed the diel and circadian leaf transcriptomes in the barley cultivar Bowman and derived introgression lines carrying mutations in EARLY FLOWERING 3 (ELF3), LUX1, and EARLY MATURITY 7 (EAM7). |
| PRJNA668924 | INTERMEDIUM-M encodes an HvAP2L-H5 ortholog and is required for inflorescence indeterminacy and spikelet determinacy in barley. | INTERMEDIUM-M encodes an HvAP2L-H5 ortholog and is required for inflorescence indeterminacy and spikelet determinacy in barley | Illumina HiSeq 2500, Illumina Genome Analyzer IIx | Inflorescence architecture dictates the number of flowers and hence seeds. The architectural differences between two related cereals barley and wheat are controlled by differences in determinacy of inflorescence and spikelet meristems. Here, we characterize two allelic series of mutations named intermedium-m (int-m) and double seed1 (dub1) that convert barley indeterminate inflorescences into wheat-like determinate inflorescences bearing a multi-floreted terminal spikelet and indeterminate spikelets with additional florets. We collected mRNA from developing spikes from the double ridge (DR), triple-mound-spikelet meristem (TM-SM), floret meristem (FM, a.k.a lemma primordium), stamen primordium (StP) and awn primordium (AP) stages. We then used the RNA-sequencing (RNA-seq) to sequence the mRNA samples for both variants calling for introgression mapping and differential gene expression analysis between the wildtype Bowman and two int-m Near-isogenic lines (NIL). |
Detail information of sequencing samples
| Run | Cultivar | Organism Part | Replicates |
|---|---|---|---|
| ERR1457188 | Morex | Grain, bracts removed(5DPA) | CAR5_2_B1 |
| ERR1457163 | Morex | Grain, bracts removed(5DPA) | CAR5_2_B2 |
| ERR1457189 | Morex | Grain, bracts removed(5DPA) | CAR5_3_B1 |
| ERR1457164 | Morex | Grain, bracts removed(5DPA) | CAR5_3_B2 |
| ERR1457190 | Morex | Grain, bracts removed(5DPA) | CAR5_4_B1 |
| ERR1457165 | Morex | Grain, bracts removed(5DPA) | CAR5_4_B2 |
| ERR1457197 | Morex | Grain, bracts removed(15DPA) | CAR15_1_B1 |
| ERR1457172 | Morex | Grain, bracts removed(15DPA) | CAR15_1_B2 |
| ERR1457198 | Morex | Grain, bracts removed(15DPA) | CAR15_2_B1 |
| ERR1457173 | Morex | Grain, bracts removed(15DPA) | CAR15_2_B2 |
| ERR1457199 | Morex | Grain, bracts removed(15DPA) | CAR15_4_B1 |
| ERR1457174 | Morex | Grain, bracts removed(15DPA) | CAR15_4_B2 |
| ERR1457191 | Morex | Embryos(4d dissected from germinating grains) | EMB_a_B1 |
| ERR1457166 | Morex | Embryos(4d dissected from germinating grains) | EMB_a_B2 |
| ERR1457192 | Morex | Embryos(4d dissected from germinating grains) | EMB_b_B1 |
| ERR1457167 | Morex | Embryos(4d dissected from germinating grains) | EMB_b_B2 |
| ERR1457193 | Morex | Embryos(4d dissected from germinating grains) | EMB_c_B1 |
| ERR1457168 | Morex | Embryos(4d dissected from germinating grains) | EMB_c_B2 |
| ERR1457224 | Morex | Epidermis(4 weeks) | EPI_1_B1 |
| ERR1457248 | Morex | Epidermis(4 weeks) | EPI_1_B2 |
| ERR1457225 | Morex | Epidermis(4 weeks) | EPI_2_B1 |
| ERR1457249 | Morex | Epidermis(4 weeks) | EPI_2_B2 |
| ERR1457226 | Morex | Epidermis(4 weeks) | EPI_3_B1 |
| ERR1457250 | Morex | Epidermis(4 weeks) | EPI_3_B2 |
| ERR1457212 | Morex | Etiolated(10 day old seedling) | ETI_1_B1 |
| ERR1457236 | Morex | Etiolated(10 day old seedling) | ETI_1_B2 |
| ERR1457213 | Morex | Etiolated(10 day old seedling) | ETI_2_B1 |
| ERR1457237 | Morex | Etiolated(10 day old seedling) | ETI_2_B2 |
| ERR1457214 | Morex | Etiolated(10 day old seedling) | ETI_3_B1 |
| ERR1457238 | Morex | Etiolated(10 day old seedling) | ETI_3_B2 |
| ERR1457209 | Morex | Young Inflorescences(5mm) | INF1_a_B1 |
| ERR1457184 | Morex | Young Inflorescences(5mm) | INF1_a_B2 |
| ERR1457210 | Morex | Young Inflorescences(5mm) | INF1_b_B1 |
| ERR1457185 | Morex | Young Inflorescences(5mm) | INF1_b_B2 |
| ERR1457211 | Morex | Young Inflorescences(5mm) | INF1_c_B1 |
| ERR1457186 | Morex | Young Inflorescences(5mm) | INF1_c_B2 |
| ERR1457203 | Morex | Inflorescences(1-1.5cm) | INF2_f_B1 |
| ERR1457178 | Morex | Inflorescences(1-1.5cm) | INF2_f_B2 |
| ERR1457204 | Morex | Inflorescences(1-1.5cm) | INF2_g_B1 |
| ERR1457179 | Morex | Inflorescences(1-1.5cm) | INF2_g_B2 |
| ERR1457205 | Morex | Inflorescences(1-1.5cm) | INF2_h_B1 |
| ERR1457180 | Morex | Inflorescences(1-1.5cm) | INF2_h_B2 |
| ERR1457200 | Morex | Shoot from the seedlings(10cm shoot stage) | LEA_a_B1 |
| ERR1457175 | Morex | Shoot from the seedlings(10cm shoot stage) | LEA_a_B2 |
| ERR1457201 | Morex | Shoot from the seedlings(10cm shoot stage) | LEA_b_B1 |
| ERR1457176 | Morex | Shoot from the seedlings(10cm shoot stage) | LEA_b_B2 |
| ERR1457202 | Morex | Shoot from the seedlings(10cm shoot stage) | LEA_c_B1 |
| ERR1457177 | Morex | Shoot from the seedlings(10cm shoot stage) | LEA_c_B2 |
| ERR1457215 | Morex | Lemma(6 weeks PA) | LEM_1_B1 |
| ERR1457239 | Morex | Lemma(6 weeks PA) | LEM_1_B2 |
| ERR1457216 | Morex | Lemma(6 weeks PA) | LEM_2_B1 |
| ERR1457240 | Morex | Lemma(6 weeks PA) | LEM_2_B2 |
| ERR1457217 | Morex | Lemma(6 weeks PA) | LEM_3_B1 |
| ERR1457241 | Morex | Lemma(6 weeks PA) | LEM_3_B2 |
| ERR1457218 | Morex | Lodicule(6 weeks PA) | LOD_1_B1 |
| ERR1457242 | Morex | Lodicule(6 weeks PA) | LOD_1_B2 |
| ERR1457219 | Morex | Lodicule(6 weeks PA) | LOD_2_B1 |
| ERR1457243 | Morex | Lodicule(6 weeks PA) | LOD_2_B2 |
| ERR1457220 | Morex | Lodicule(6 weeks PA) | LOD_3_B1 |
| ERR1457244 | Morex | Lodicule(6 weeks PA) | LOD_3_B2 |
| ERR1457206 | Morex | Developing tillers(six leaf stage) | NOD_a_B1 |
| ERR1457181 | Morex | Developing tillers(six leaf stage) | NOD_a_B2 |
| ERR1457207 | Morex | Developing tillers(six leaf stage) | NOD_b_B1 |
| ERR1457182 | Morex | Developing tillers(six leaf stage) | NOD_b_B2 |
| ERR1457208 | Morex | Developing tillers(six leaf stage) | NOD_c_B1 |
| ERR1457183 | Morex | Developing tillers(six leaf stage) | NOD_c_B2 |
| ERR1457221 | Morex | Palea(6 weeks PA) | PAL_1_B1 |
| ERR1457245 | Morex | Palea(6 weeks PA) | PAL_1_B2 |
| ERR1457222 | Morex | Palea(6 weeks PA) | PAL_2_B1 |
| ERR1457246 | Morex | Palea(6 weeks PA) | PAL_2_B2 |
| ERR1457223 | Morex | Palea(6 weeks PA) | PAL_3_B1 |
| ERR1457247 | Morex | Palea(6 weeks PA) | PAL_3_B2 |
| ERR1457227 | Morex | Rachis(5 weeks PA) | RAC_1_B1 |
| ERR1457251 | Morex | Rachis(5 weeks PA) | RAC_1_B2 |
| ERR1457228 | Morex | Rachis(5 weeks PA) | RAC_2_B1 |
| ERR1457252 | Morex | Rachis(5 weeks PA) | RAC_2_B2 |
| ERR1457229 | Morex | Rachis(5 weeks PA) | RAC_3_B1 |
| ERR1457253 | Morex | Rachis(5 weeks PA) | RAC_3_B2 |
| ERR1457194 | Morex | Root(4 weeks) | ROO_a_B1 |
| ERR1457169 | Morex | Root(4 weeks) | ROO_a_B2 |
| ERR1457195 | Morex | Root(4 weeks) | ROO_b_B1 |
| ERR1457170 | Morex | Root(4 weeks) | ROO_b_B2 |
| ERR1457196 | Morex | Root(4 weeks) | ROO_c_B1 |
| ERR1457171 | Morex | Root(4 weeks) | ROO_c_B2 |
| ERR1457230 | Morex | Roots from the seedlings(10cm shoot stage) | ROO2_1_B1 |
| ERR1457254 | Morex | Roots from the seedlings(10cm shoot stage) | ROO2_1_B2 |
| ERR1457231 | Morex | Roots from the seedlings(10cm shoot stage) | ROO2_2_B1 |
| ERR1457255 | Morex | Roots from the seedlings(10cm shoot stage) | ROO2_2_B2 |
| ERR1457232 | Morex | Roots from the seedlings(10cm shoot stage) | ROO2_3_B1 |
| ERR1457256 | Morex | Roots from the seedlings(10cm shoot stage) | ROO2_3_B2 |
| ERR1457233 | Morex | Senescing leaf(2 months) | SEN_1_B1 |
| ERR1457257 | Morex | Senescing leaf(2 months) | SEN_1_B2 |
| ERR1457234 | Morex | Senescing leaf(2 months) | SEN_2_B1 |
| ERR1457258 | Morex | Senescing leaf(2 months) | SEN_2_B2 |
| ERR1457235 | Morex | Senescing leaf(2 months) | SEN_3_B1 |
| ERR1457259 | Morex | Senescing leaf(2 months) | SEN_3_B2 |
| Run | Accession | Stage | Replicate |
|---|---|---|---|
| ERR2026421 | Bowman | AP, 5 mm ± 1 mm spike length | 1 |
| ERR2026422 | Bowman | AP, 5 mm ± 1 mm spike length | 2 |
| ERR2026423 | Bowman | AP, 5 mm ± 1 mm spike length | 3 |
| ERR2026424 | Bowman | AP, 5 mm ± 1 mm spike length | 4 |
| ERR2026425 | Bowman | AP, 5 mm ± 1 mm spike length | 7 |
| ERR2026426 | Bowman | AP, 5 mm ± 1 mm spike length | 8 |
| ERR2026427 | Bowman | AP, 5 mm ± 1 mm spike length | 9 |
| ERR2026428 | Bowman | AP, 5 mm ± 1 mm spike length | 10 |
| ERR2026429 | Bowman | WA, 10 mm ± 1 mm spike length | 1 |
| ERR2026430 | Bowman | WA, 10 mm ± 1 mm spike length | 2 |
| ERR2026431 | Bowman | WA, 10 mm ± 1 mm spike length | 3 |
| ERR2026432 | Bowman | WA, 10 mm ± 1 mm spike length | 4 |
| ERR2026433 | Bowman | WA, 10 mm ± 1 mm spike length | 7 |
| ERR2026434 | Bowman | WA, 10 mm ± 1 mm spike length | 8 |
| ERR2026435 | Bowman | WA, 10 mm ± 1 mm spike length | 9 |
| ERR2026436 | Bowman | WA, 10 mm ± 1 mm spike length | 10 |
| ERR2026437 | BW902 | AP, 5 mm ± 1 mm spike length | 1 |
| ERR2026438 | BW902 | AP, 5 mm ± 1 mm spike length | 2 |
| ERR2026439 | BW902 | AP, 5 mm ± 1 mm spike length | 3 |
| ERR2026440 | BW902 | AP, 5 mm ± 1 mm spike length | 4 |
| ERR2026441 | BW902 | AP, 5 mm ± 1 mm spike length | 7 |
| ERR2026442 | BW902 | AP, 5 mm ± 1 mm spike length | 8 |
| ERR2026443 | BW902 | AP, 5 mm ± 1 mm spike length | 9 |
| ERR2026444 | BW902 | AP, 5 mm ± 1 mm spike length | 10 |
| ERR2026445 | BW902 | WA, 10 mm ± 1 mm spike length | 1 |
| ERR2026446 | BW902 | WA, 10 mm ± 1 mm spike length | 2 |
| ERR2026447 | BW902 | WA, 10 mm ± 1 mm spike length | 3 |
| ERR2026448 | BW902 | WA, 10 mm ± 1 mm spike length | 4 |
| ERR2026449 | BW902 | WA, 10 mm ± 1 mm spike length | 7 |
| ERR2026450 | BW902 | WA, 10 mm ± 1 mm spike length | 8 |
| ERR2026451 | BW902 | WA, 10 mm ± 1 mm spike length | 9 |
| ERR2026452 | BW902 | WA, 10 mm ± 1 mm spike length | 10 |
| Run | Accession | Age | Tissue |
|---|---|---|---|
| ERR2031041 | Barke | 8 to 10 days | stomatal complex |
| ERR2031042 | Barke | 8 to 10 days | total leaf |
| ERR2031043 | Barke | 8 to 10 days | leaf without upper and lower epidermis |
| Run | Accession | Stage | Replicate |
|---|---|---|---|
| ERR2510895 | L94 | embryo samples of mature seeds | Replicate 1.1 |
| ERR2510896 | L94 | embryo samples of mature seeds | Replicate 1.2 |
| ERR2510897 | L94 | embryo samples of mature seeds | Replicate 2.1 |
| ERR2510898 | L94 | embryo samples of mature seeds | Replicate 2.2 |
| ERR2510899 | L94 | embryo samples of mature seeds | Replicate 3 |
| ERR2510900 | Cebada Capa | embryo samples of mature seeds | Replicate 1 |
| ERR2510901 | Cebada Capa | embryo samples of mature seeds | Replicate 2 |
| ERR2510902 | Cebada Capa | embryo samples of mature seeds | Replicate 3 |
| ERR2510903 | Cebada Capa | embryo samples of mature seeds | Replicate 4 |
| ERR2510904 | RIL 114 | embryo samples of mature seeds | Replicate 1 |
| ERR2510905 | RIL 114 | embryo samples of mature seeds | Replicate 2 |
| ERR2510906 | RIL 114 | embryo samples of mature seeds | Replicate 3.1 |
| ERR2510907 | RIL 114 | embryo samples of mature seeds | Replicate 3.2 |
| ERR2510908 | RIL 114 | embryo samples of mature seeds | Replicate 4.1 |
| ERR2510909 | RIL 114 | embryo samples of mature seeds | Replicate 4.2 |
| ERR2510910 | NIL-SLQ2 | embryo samples of mature seeds | Replicate 1 |
| ERR2510911 | NIL-SLQ2 | embryo samples of mature seeds | Replicate 2 |
| ERR2510912 | NIL-SLQ2 | embryo samples of mature seeds | Replicate 3.1 |
| ERR2510913 | NIL-SLQ2 | embryo samples of mature seeds | Replicate 3.2 |
| ERR2510914 | NIL-SLQ2 | embryo samples of mature seeds | Replicate 4.1 |
| ERR2510915 | NIL-SLQ2 | embryo samples of mature seeds | Replicate 4.2 |
| ERR2510916 | NIL-SLQ1.2 | embryo samples of mature seeds | Replicate 1 |
| ERR2510917 | NIL-SLQ1.2 | embryo samples of mature seeds | Replicate 2 |
| ERR2510918 | NIL-SLQ1.2 | embryo samples of mature seeds | Replicate 3.1 |
| ERR2510919 | NIL-SLQ1.2 | embryo samples of mature seeds | Replicate 3.2 |
| ERR2510920 | NIL-SLQ1.2 | embryo samples of mature seeds | Replicate 4.1 |
| ERR2510921 | NIL-SLQ1.2 | embryo samples of mature seeds | Replicate 4.2 |
| ERR2510922 | NIL-SLQ1.3 | embryo samples of mature seeds | Replicate 1.1 |
| ERR2510923 | NIL-SLQ1.3 | embryo samples of mature seeds | Replicate 1.2 |
| ERR2510924 | NIL-SLQ1.3 | embryo samples of mature seeds | Replicate 2.1 |
| ERR2510925 | NIL-SLQ1.3 | embryo samples of mature seeds | Replicate 2.2 |
| ERR2510926 | NIL-SLQ1.3 | embryo samples of mature seeds | Replicate 3 |
| ERR2510927 | NIL-SLQ1.3 | embryo samples of mature seeds | Replicate 4 |
| ERR2510928 | NIL-SLQ1.1 | embryo samples of mature seeds | Replicate 1.1 |
| ERR2510929 | NIL-SLQ1.1 | embryo samples of mature seeds | Replicate 1.2 |
| ERR2510930 | NIL-SLQ1.1 | embryo samples of mature seeds | Replicate 2.1 |
| ERR2510931 | NIL-SLQ1.1 | embryo samples of mature seeds | Replicate 2.2 |
| ERR2510932 | NIL-SLQ1.1 | embryo samples of mature seeds | Replicate 3 |
| ERR2510933 | NIL-SLQ1.1 | embryo samples of mature seeds | Replicate 4 |
| Run | Accession | Tissue |
|---|---|---|
| SRR1810059 | Bass | Germinating seeds |
| SRR1810060 | Bass | Germinating seeds |
| SRR1810061 | Harrington | Germinating seeds |
| SRR1810062 | Harrington | Germinating seeds |
| SRR1810063 | Stirling | Germinating seeds |
| SRR1810064 | Stirling | Germinating seeds |
| SRR1810065 | Baudin | Germinating seeds |
| SRR1810066 | Baudin | Germinating seeds |
| Run | Accession | Stage |
|---|---|---|
| SRR5320385 | Manchuria | First leaf fully expanded, second leaf emerging |
| SRR5320388 | CI 16153 | First leaf fully expanded, second leaf emerging |
| SRR5320389 | CI 16147 | First leaf fully expanded, second leaf emerging |
| SRR5320390 | CIho 4196 | First leaf fully expanded, second leaf emerging |
| SRR5320556 | Haruna Nijo | First leaf fully expanded, second leaf emerging |
| SRR5320557 | Haruna Nijo | First leaf fully expanded, second leaf emerging |
| Run | Accession | Stage | Replicate |
|---|---|---|---|
| SRR5344983 | WBDC 259 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5344984 | WBDC 259 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5344985 | WBDC 172 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5344986 | WBDC 172 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5344987 | WBDC 110 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5344988 | WBDC 110 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5344989 | WBDC 109 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5344990 | WBDC 109 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5344991 | WBDC 085 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5344992 | WBDC 085 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5344993 | WBDC 013 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5344994 | WBDC 013 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5344995 | WBDC 008 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5344996 | WBDC 008 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5344997 | SusPtrit | First leaf fully expanded, second leaf emerging | 1 |
| SRR5344998 | Sultan 5 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5344999 | Sultan 5 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345000 | Q21861 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345001 | Q21861 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345002 | Pallas | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345003 | Maritime | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345004 | Maritime | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345005 | Igri | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345006 | I5 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345007 | I5 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345008 | HOR 1428 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345009 | HOR 1428 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345010 | Hindmarsh | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345011 | Hindmarsh | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345012 | Heils Franken | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345013 | Heils Franken | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345014 | Grannenlose Zweizeilige | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345015 | Grannenlose Zweizeilige | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345016 | Golden Promise | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345017 | Golden Promise | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345018 | Fong Tien | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345019 | Fong Tien | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345020 | Finniss | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345021 | Finniss | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345022 | Emir | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345023 | Emir | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345024 | Duplex | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345025 | Duplex | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345026 | Commander | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345027 | Commander | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345028 | CI 16139 | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345029 | CI 16139 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345030 | Bowman | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345031 | Bowman | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345032 | Betzes | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345033 | BCD47 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345034 | BCD12 | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345035 | Baronesse | First leaf fully expanded, second leaf emerging | 1 |
| SRR5345036 | Barke | First leaf fully expanded, second leaf emerging | 2 |
| SRR5345037 | Barke | First leaf fully expanded, second leaf emerging | 1 |
| Run | Phenotype | Stage |
|---|---|---|
| SRR5890939 | Bowman 1327A 1327A | Waddington stage 3.5 |
| SRR5890940 | Bowman 1327B 1327B | Waddington stage 3.5 |
| SRR5890941 | Bowman 1327C 1327C | Waddington stage 3.5 |
| SRR5890942 | Bowman 1327C 1327C | Waddington stage 3.5 |
| SRR5890943 | Bowman 1327D 1327D | Waddington stage 3.5 |
| SRR5890944 | Bowman 1327D 1327D | Waddington stage 3.5 |
| SRR5890945 | Bowman 1327E 1327E | Waddington stage 5.5 |
| SRR5890946 | Bowman 1327E 1327E | Waddington stage 5.5 |
| SRR5890947 | Bowman 1327F 1327F | Waddington stage 5.5 |
| SRR5890948 | Bowman 1327F 1327F | Waddington stage 5.5 |
| SRR5890949 | Bowman 1327G 1327G | Waddington stage 5.5 |
| SRR5890950 | Bowman 1327G 1327G | Waddington stage 5.5 |
| SRR5890951 | Bowman 1327H 1327H | Waddington stage 5.5 |
| SRR5890952 | int-a.1 (GSHO 2055) 1327AA 1327AA | Waddington stage 3.5 |
| SRR5890953 | int-a.1 (GSHO 2055) 1327AA 1327AA | Waddington stage 3.5 |
| SRR5890954 | int-a.1 (GSHO 2055) 1327AB 1327AB | Waddington stage 3.5 |
| SRR5890955 | int-a.1 (GSHO 2055) 1327AB 1327AB | Waddington stage 3.5 |
| SRR5890956 | int-a.1 (GSHO 2055) 1327AC 1327AC | Waddington stage 3.5 |
| SRR5890957 | int-a.1 (GSHO 2055) 1327AC 1327AC | Waddington stage 3.5 |
| SRR5890958 | int-a.1 (GSHO 2055) 1327AD 1327AD | Waddington stage 5.5 |
| SRR5890959 | int-a.1 (GSHO 2055) 1327AD 1327AD | Waddington stage 5.5 |
| SRR5890960 | int-a.1 (GSHO 2055) 1327AE 1327AE | Waddington stage 5.5 |
| SRR5890961 | int-a.1 (GSHO 2055) 1327AE 1327AE | Waddington stage 5.5 |
| SRR5890962 | int-a.1 (GSHO 2055) 1327AF 1327AF | Waddington stage 5.5 |
| SRR5890963 | int-a.1 (GSHO 2055) 1327AF 1327AF | Waddington stage 5.5 |
| SRR5890964 | vrs4.k (GSHO 1986) 1327AM 1327AM | Waddington stage 3.5 |
| SRR5890965 | vrs4.k (GSHO 1986) 1327AM 1327AM | Waddington stage 3.5 |
| SRR5890966 | vrs4.k (GSHO 1986) 1327AN 1327AN | Waddington stage 3.5 |
| SRR5890967 | vrs4.k (GSHO 1986) 1327AN 1327AN | Waddington stage 3.5 |
| SRR5890968 | vrs4.k (GSHO 1986) 1327AO 1327AO | Waddington stage 3.5 |
| SRR5890969 | vrs4.k (GSHO 1986) 1327AO 1327AO | Waddington stage 3.5 |
| SRR5890970 | vrs4.k (GSHO 1986) 1327AP 1327AP | Waddington stage 5.5 |
| SRR5890971 | vrs4.k (GSHO 1986) 1327AQ 1327AQ | Waddington stage 5.5 |
| SRR5890972 | vrs4.k (GSHO 1986) 1327AQ 1327AQ | Waddington stage 5.5 |
| SRR5890973 | vrs4.k (GSHO 1986) 1327AR 1327AR | Waddington stage 5.5 |
| SRR5890974 | vrs4.k (GSHO 1986) 1327AR 1327AR | Waddington stage 5.5 |
| SRR5890975 | vrs1 (GSHO 1907) 1327AS 1327AS | Waddington stage 3.5 |
| SRR5890976 | vrs1 (GSHO 1907) 1327AS 1327AS | Waddington stage 3.5 |
| SRR5890977 | vrs1 (GSHO 1907) 1327AT 1327AT | Waddington stage 3.5 |
| SRR5890978 | vrs1 (GSHO 1907) 1327AT 1327AT | Waddington stage 3.5 |
| SRR5890979 | vrs1 (GSHO 1907) 1327AU 1327AU | Waddington stage 3.5 |
| SRR5890980 | vrs1 (GSHO 1907) 1327AU 1327AU | Waddington stage 3.5 |
| SRR5890981 | vrs1 (GSHO 1907) 1327AV 1327AV | Waddington stage 5.5 |
| SRR5890982 | vrs1 (GSHO 1907) 1327AV 1327AV | Waddington stage 5.5 |
| SRR5890983 | vrs1 (GSHO 1907) 1327AW 1327AW | Waddington stage 5.5 |
| SRR5890984 | vrs1 (GSHO 1907) 1327AX 1327AX | Waddington stage 5.5 |
| SRR5890985 | vrs1 (GSHO 1907) 1327AX 1327AX | Waddington stage 5.5 |
| SRR5890986 | int-c.5 (GSHO 2003) 1327U 1327U | Waddington stage 3.5 |
| SRR5890987 | int-c.5 (GSHO 2003) 1327U 1327U | Waddington stage 3.5 |
| SRR5890988 | int-c.5 (GSHO 2003) 1327V 1327V | Waddington stage 3.5 |
| SRR5890989 | int-c.5 (GSHO 2003) 1327V 1327V | Waddington stage 3.5 |
| SRR5890990 | int-c.5 (GSHO 2003) 1327W 1327W | Waddington stage 3.5 |
| SRR5890991 | int-c.5 (GSHO 2003) 1327W 1327W | Waddington stage 3.5 |
| SRR5890992 | int-c.5 (GSHO 2003) 1327X 1327X | Waddington stage 5.5 |
| SRR5890993 | int-c.5 (GSHO 2003) 1327X 1327X | Waddington stage 5.5 |
| SRR5890994 | int-c.5 (GSHO 2003) 1327Y 1327Y | Waddington stage 5.5 |
| SRR5890995 | int-c.5 (GSHO 2003) 1327Y 1327Y | Waddington stage 5.5 |
| SRR5890996 | int-c.5 (GSHO 2003) 1327Z 1327Z | Waddington stage 5.5 |
| SRR5890997 | int-c.5 (GSHO 2003) 1327Z 1327Z | Waddington stage 5.5 |
| Run | Accession | Stage | Replicate |
|---|---|---|---|
| SRR6433028 | Gobernadora | Uninucleate and haploide microspore(Day 0) | replicate1 |
| SRR6433027 | Gobernadora | Uninucleate and haploide microspore(Day 0) | replicate2 |
| SRR6433026 | Gobernadora | Uninucleate and haploide microspore(Day 0) | replicate3 |
| SRR6433025 | Gobernadora | Uninucleate and haploide microspore(Day 0) | replicate4 |
| SRR6433032 | Gobernadora | Enlarged microspore after stress pretraitment(Day 2) | replicate1 |
| SRR6433031 | Gobernadora | Enlarged microspore after stress pretraitment(Day 2) | replicate2 |
| SRR6433030 | Gobernadora | Enlarged microspore after stress pretraitment(Day 2) | replicate3 |
| SRR6433029 | Gobernadora | Enlarged microspore after stress pretraitment(Day 2) | replicate4 |
| SRR6433024 | Gobernadora | Stat-like to multicellular structure microspore(Day 5) | replicate1 |
| SRR6433023 | Gobernadora | Stat-like to multicellular structure microspore(Day 5) | replicate2 |
| SRR6433016 | Gobernadora | Stat-like to multicellular structure microspore(Day 5) | replicate3 |
| SRR6433015 | Gobernadora | Stat-like to multicellular structure microspore(Day 5) | replicate4 |
| SRR6433018 | Gobernadora | Uninucleate and haploide microspore(Day 0) | replicate1 |
| SRR6433017 | Gobernadora | Uninucleate and haploide microspore(Day 0) | replicate2 |
| SRR6433020 | Gobernadora | Uninucleate and haploide microspore(Day 0) | replicate3 |
| SRR6433019 | Gobernadora | Uninucleate and haploide microspore(Day 0) | replicate4 |
| SRR6433022 | Gobernadora | Enlarged microspore after stress pretraitment(Day 2) | replicate1 |
| SRR6433021 | Gobernadora | Enlarged microspore after stress pretraitment(Day 2) | replicate2 |
| SRR6433014 | Gobernadora | Enlarged microspore after stress pretraitment(Day 2) | replicate3 |
| SRR6433013 | Gobernadora | Enlarged microspore after stress pretraitment(Day 2) | replicate4 |
| SRR6433009 | Gobernadora | Stat-like to multicellular structure microspore(Day 5) | replicate1 |
| SRR6433010 | Gobernadora | Stat-like to multicellular structure microspore(Day 5) | replicate2 |
| SRR6433011 | Gobernadora | Stat-like to multicellular structure microspore(Day 5) | replicate3 |
| SRR6433012 | Gobernadora | Stat-like to multicellular structure microspore(Day 5) | replicate4 |
| Run | Accession | Tissue | Replicate |
|---|---|---|---|
| SRR8053407 | WI4330 | dry seed(plumule) | 0P1 |
| SRR8053406 | WI4330 | dry seed(plumule) | 0P3 |
| SRR8053402 | WI4330 | dry seed(radicle) | 0R1 |
| SRR8053434 | WI4330 | dry seed(radicle) | 0R2 |
| SRR8053404 | WI4330 | dry seed(radicle) | 0R3 |
| SRR8053409 | WI4330 | dry seed(scutellum) | 0S1 |
| SRR8053408 | WI4330 | dry seed(scutellum) | 0S2 |
| SRR8053403 | WI4330 | dry seed(scutellum) | 0S3 |
| SRR8053411 | WI4330 | germinating seed(plumule) | 8P1 |
| SRR8053400 | WI4330 | germinating seed(plumule) | 8P2 |
| SRR8053458 | WI4330 | germinating seed(plumule) | 8P3 |
| SRR8053454 | WI4330 | germinating seed(radicle) | 8R1 |
| SRR8053453 | WI4330 | germinating seed(radicle) | 8R2 |
| SRR8053452 | WI4330 | germinating seed(radicle) | 8R3 |
| SRR8053457 | WI4330 | germinating seed(scutellum) | 8S1 |
| SRR8053456 | WI4330 | germinating seed(scutellum) | 8S2 |
| SRR8053455 | WI4330 | germinating seed(scutellum) | 8S3 |
| SRR8053451 | WI4330 | germinating seed(plumule) | 16P1 |
| SRR8053450 | WI4330 | germinating seed(plumule) | 16P2 |
| SRR8053449 | WI4330 | germinating seed(plumule) | 16P3 |
| SRR8053427 | WI4330 | germinating seed(radicle) | 16R1 |
| SRR8053424 | WI4330 | germinating seed(radicle) | 16R2 |
| SRR8053425 | WI4330 | germinating seed(radicle) | 16R3 |
| SRR8053428 | WI4330 | germinating seed(scutellum) | 16S1 |
| SRR8053429 | WI4330 | germinating seed(scutellum) | 16S2 |
| SRR8053426 | WI4330 | germinating seed(scutellum) | 16S3 |
| SRR8053422 | WI4330 | germinating seed(plumule) | 24P1 |
| SRR8053423 | WI4330 | germinating seed(plumule) | 24P2 |
| SRR8053431 | WI4330 | germinating seed(plumule) | 24P3 |
| SRR8053437 | WI4330 | germinating seed(radicle) | 24R1 |
| SRR8053435 | WI4330 | germinating seed(radicle) | 24R2 |
| SRR8053444 | WI4330 | germinating seed(radicle) | 24R3 |
| SRR8053432 | WI4330 | germinating seed(scutellum) | 24S1 |
| SRR8053448 | WI4330 | germinating seed(scutellum) | 24S2 |
| SRR8053447 | WI4330 | germinating seed(scutellum) | 24S3 |
| SRR8053443 | WI4330 | germinating seed(plumule) | 32P1 |
| SRR8053446 | WI4330 | germinating seed(plumule) | 32P2 |
| SRR8053445 | WI4330 | germinating seed(plumule) | 32P3 |
| SRR8053419 | WI4330 | germinating seed(radicle) | 32R1 |
| SRR8053420 | WI4330 | germinating seed(radicle) | 32R3 |
| SRR8053436 | WI4330 | germinating seed(scutellum) | 32S1 |
| SRR8053441 | WI4330 | germinating seed(scutellum) | 32S2 |
| SRR8053418 | WI4330 | germinating seed(scutellum) | 32S3 |
| SRR8053421 | WI4330 | germinating seed(plumule) | 40P1 |
| SRR8053414 | WI4330 | germinating seed(plumule) | 40P2 |
| SRR8053415 | WI4330 | germinating seed(plumule) | 40P3 |
| SRR8053412 | WI4330 | germinating seed(radicle) | 40R1 |
| SRR8053413 | WI4330 | germinating seed(radicle) | 40R2 |
| SRR8053401 | WI4330 | germinating seed(radicle) | 40R3 |
| SRR8053416 | WI4330 | germinating seed(scutellum) | 40S1 |
| SRR8053417 | WI4330 | germinating seed(scutellum) | 40S3 |
| SRR8053405 | WI4330 | germinating seed(plumule) | 48P1 |
| SRR8053442 | WI4330 | germinating seed(plumule) | 48P2 |
| SRR8053438 | WI4330 | germinating seed(plumule) | 48P3 |
| SRR8053430 | WI4330 | germinating seed(radicle) | 48R1 |
| SRR8053440 | WI4330 | germinating seed(radicle) | 48R2 |
| SRR8053439 | WI4330 | germinating seed(radicle) | 48R3 |
| SRR8053410 | WI4330 | germinating seed(scutellum) | 48S1 |
| SRR8053399 | WI4330 | germinating seed(scutellum) | 48S2 |
| SRR8053433 | WI4330 | germinating seed(scutellum) | 48S3 |
| Run | Stage | Replicate |
|---|---|---|
| SRR9889989 | 1.0-1.2 mm anthers(anther pachytene–diplotene) | Biological replicate 2 |
| SRR9889992 | 0.5-0.9 mm anthers(meiocyte leptotene–zygotene) | Biological replicate 2 |
| SRR9889994 | 0.3-0.4 mm anthers(anther pre-meiosis) | Biological replicate 2 |
| SRR9889997 | 1.0-1.2 mm anthers(anther pachytene–diplotene) | Biological replicate 1 |
| SRR9889998 | 0.5-0.9 mm anthers(meiocyte leptotene–zygotene) | Biological replicate 3 |
| SRR9890000 | 1.0-1.2 mm anthers(anther pachytene–diplotene) | Biological replicate 2 |
| SRR9890002 | 1.3-1.4 mm anthers(anther metaphase I–tetrad) | Biological replicate 3 |
| SRR9890003 | 0.3-0.4 mm anthers(anther pre-meiosis) | Biological replicate 1 |
| SRR9890004 | 0.5-0.9 mm anthers(meiocyte leptotene–zygotene) | Biological replicate 1 |
| SRR9890005 | 0.5-0.9 mm anthers(meiocyte leptotene–zygotene) | Biological replicate 2 |
| SRR9889990 | 1.0-1.2 mm anthers(anther pachytene–diplotene) | Biological replicate 1 |
| SRR9889991 | 0.5-0.9 mm anthers(meiocyte leptotene–zygotene) | Biological replicate 3 |
| SRR9889993 | 0.3-0.4 mm anthers(anther pre-meiosis) | Biological replicate 3 |
| SRR9889995 | 1.3-1.4 mm anthers(anther metaphase I–tetrad) | Biological replicate 1 |
| SRR9889996 | 1.0-1.2 mm anthers(anther pachytene–diplotene) | Biological replicate 3 |
| SRR9889999 | 1.0-1.2 mm anthers(anther pachytene–diplotene) | Biological replicate 3 |
| SRR9890001 | 1.3-1.4 mm anthers(anther metaphase I–tetrad) | Biological replicate 2 |
| SRR9890006 | 0.5-0.9 mm anthers(meiocyte leptotene–zygotene) | Biological replicate 1 |
This project contains 1467 samples, and we provide the download file for display. PRJEB39672_Sample_info.xlsx
| Run | Accession | Stage | Treatment | Replicate |
|---|---|---|---|---|
| ERR1248084 | Scarlett | young inflorescences | control | 1 |
| ERR1248085 | Scarlett | young inflorescences | control | 2 |
| ERR1248086 | Scarlett | young inflorescences | drought | 1 |
| ERR1248087 | Scarlett | young inflorescences | drought | 2 |
| ERR1248088 | Scarlett | young inflorescences | greenhouse | 1 |
| ERR1248089 | Scarlett | young inflorescences | greenhouse | 2 |
| ERR1248116 | Scarlett | Leaf | control | 1 |
| ERR1248117 | Scarlett | Leaf | control | 2 |
| ERR1248118 | Scarlett | Leaf | control | 3 |
| ERR1248119 | Scarlett | Leaf | drought | 1 |
| ERR1248120 | Scarlett | Leaf | drought | 2 |
| ERR1248121 | Scarlett | Leaf | drought | 3 |
| ERR1248122 | Scarlett | Leaf | greenhouse | 1 |
| ERR1248123 | Scarlett | Leaf | greenhouse | 2 |
| ERR1248274 | SBCC073 | young inflorescences | control | 1 |
| ERR1248275 | SBCC073 | young inflorescences | control | 2 |
| ERR1248276 | SBCC073 | young inflorescences | drought | 1 |
| ERR1248277 | SBCC073 | young inflorescences | drought | 2 |
| ERR1248278 | SBCC073 | young inflorescences | greenhouse | 1 |
| ERR1248279 | SBCC073 | young inflorescences | greenhouse | 2 |
| ERR1248280 | SBCC073 | Leaf | control | 1 |
| ERR1248281 | SBCC073 | Leaf | control | 2 |
| ERR1248282 | SBCC073 | Leaf | control | 3 |
| ERR1248283 | SBCC073 | Leaf | drought | 1 |
| ERR1248284 | SBCC073 | Leaf | drought | 2 |
| ERR1248285 | SBCC073 | Leaf | drought | 3 |
| ERR1248286 | SBCC073 | Leaf | greenhouse | 1 |
| ERR1248287 | SBCC073 | Leaf | greenhouse | 2 |
| Run | Accession | Stage | Tissue | Treatment | Replicate |
|---|---|---|---|---|---|
| ERR1366263 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 1 |
| ERR1366264 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 1 |
| ERR1366265 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 1 |
| ERR1366266 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 1 |
| ERR1366267 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 2 |
| ERR1366268 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 2 |
| ERR1366269 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 2 |
| ERR1366270 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 2 |
| ERR1366271 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 3 |
| ERR1366272 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 3 |
| ERR1366273 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 3 |
| ERR1366274 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 3 |
| ERR1366275 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 4 |
| ERR1366276 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 4 |
| ERR1366277 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 4 |
| ERR1366278 | Clipper | germinating seed 3d | Root meristematic zone | 0 NaCL | 4 |
| ERR1366279 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 1 |
| ERR1366280 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 1 |
| ERR1366281 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 1 |
| ERR1366282 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 1 |
| ERR1366283 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 2 |
| ERR1366284 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 2 |
| ERR1366285 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 2 |
| ERR1366286 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 2 |
| ERR1366287 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 3 |
| ERR1366288 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 3 |
| ERR1366289 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 3 |
| ERR1366290 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 3 |
| ERR1366291 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 4 |
| ERR1366292 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 4 |
| ERR1366293 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 4 |
| ERR1366294 | Clipper | germinating seed 3d | Root elongation zone | 0 NaCL | 4 |
| ERR1366295 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 1 |
| ERR1366296 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 1 |
| ERR1366297 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 1 |
| ERR1366298 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 1 |
| ERR1366299 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 2 |
| ERR1366300 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 2 |
| ERR1366301 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 2 |
| ERR1366302 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 2 |
| ERR1366303 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 3 |
| ERR1366304 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 3 |
| ERR1366305 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 3 |
| ERR1366306 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 3 |
| ERR1366307 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 4 |
| ERR1366308 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 4 |
| ERR1366309 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 4 |
| ERR1366310 | Clipper | germinating seed 3d | Root maturation zone | 0 NaCL | 4 |
| ERR1366311 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 1 |
| ERR1366312 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 1 |
| ERR1366313 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 1 |
| ERR1366314 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 1 |
| ERR1366315 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 2 |
| ERR1366316 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 2 |
| ERR1366317 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 2 |
| ERR1366318 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 2 |
| ERR1366319 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 3 |
| ERR1366320 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 3 |
| ERR1366321 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 3 |
| ERR1366322 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 3 |
| ERR1366323 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 4 |
| ERR1366324 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 4 |
| ERR1366325 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 4 |
| ERR1366326 | Clipper | germinating seed 3d | Root meristematic zone | 100mM NaCl | 4 |
| ERR1366327 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 1 |
| ERR1366328 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 1 |
| ERR1366329 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 1 |
| ERR1366330 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 1 |
| ERR1366331 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 2 |
| ERR1366332 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 2 |
| ERR1366333 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 2 |
| ERR1366334 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 2 |
| ERR1366335 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 3 |
| ERR1366336 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 3 |
| ERR1366337 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 3 |
| ERR1366338 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 3 |
| ERR1366339 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 4 |
| ERR1366340 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 4 |
| ERR1366341 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 4 |
| ERR1366342 | Clipper | germinating seed 3d | Root elongation zone | 100mM NaCl | 4 |
| ERR1366343 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 1 |
| ERR1366344 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 1 |
| ERR1366345 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 1 |
| ERR1366346 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 1 |
| ERR1366347 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 2 |
| ERR1366348 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 2 |
| ERR1366349 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 2 |
| ERR1366350 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 2 |
| ERR1366351 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 3 |
| ERR1366352 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 3 |
| ERR1366353 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 3 |
| ERR1366354 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 3 |
| ERR1366355 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 4 |
| ERR1366356 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 4 |
| ERR1366357 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 4 |
| ERR1366358 | Clipper | germinating seed 3d | Root maturation zone | 100mM NaCl | 4 |
| ERR1366359 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 1 |
| ERR1366360 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 1 |
| ERR1366361 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 1 |
| ERR1366362 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 1 |
| ERR1366363 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 2 |
| ERR1366364 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 2 |
| ERR1366365 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 2 |
| ERR1366366 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 2 |
| ERR1366367 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 3 |
| ERR1366368 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 3 |
| ERR1366369 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 3 |
| ERR1366370 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 3 |
| ERR1366371 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 4 |
| ERR1366372 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 4 |
| ERR1366373 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 4 |
| ERR1366374 | Sahara | germinating seed 3d | Root meristematic zone | 0 NaCL | 4 |
| ERR1366375 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 1 |
| ERR1366376 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 1 |
| ERR1366377 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 1 |
| ERR1366378 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 1 |
| ERR1366379 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 2 |
| ERR1366380 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 2 |
| ERR1366381 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 2 |
| ERR1366382 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 2 |
| ERR1366383 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 3 |
| ERR1366384 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 3 |
| ERR1366385 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 3 |
| ERR1366386 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 3 |
| ERR1366387 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 4 |
| ERR1366388 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 4 |
| ERR1366389 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 4 |
| ERR1366390 | Sahara | germinating seed 3d | Root elongation zone | 0 NaCL | 4 |
| ERR1366391 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 1 |
| ERR1366392 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 1 |
| ERR1366393 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 1 |
| ERR1366394 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 1 |
| ERR1366395 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 2 |
| ERR1366396 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 2 |
| ERR1366397 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 2 |
| ERR1366398 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 2 |
| ERR1366399 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 3 |
| ERR1366400 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 3 |
| ERR1366401 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 3 |
| ERR1366402 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 3 |
| ERR1366403 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 4 |
| ERR1366404 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 4 |
| ERR1366405 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 4 |
| ERR1366406 | Sahara | germinating seed 3d | Root maturation zone | 0 NaCL | 4 |
| ERR1366407 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 1 |
| ERR1366408 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 1 |
| ERR1366409 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 1 |
| ERR1366410 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 1 |
| ERR1366411 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 2 |
| ERR1366412 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 2 |
| ERR1366413 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 2 |
| ERR1366414 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 2 |
| ERR1366415 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 3 |
| ERR1366416 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 3 |
| ERR1366417 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 3 |
| ERR1366418 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 3 |
| ERR1366419 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 4 |
| ERR1366420 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 4 |
| ERR1366421 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 4 |
| ERR1366422 | Sahara | germinating seed 3d | Root meristematic zone | 100mM NaCl | 4 |
| ERR1366423 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 1 |
| ERR1366424 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 1 |
| ERR1366425 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 1 |
| ERR1366426 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 1 |
| ERR1366427 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 2 |
| ERR1366428 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 2 |
| ERR1366429 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 2 |
| ERR1366430 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 2 |
| ERR1366431 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 3 |
| ERR1366432 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 3 |
| ERR1366433 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 3 |
| ERR1366434 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 3 |
| ERR1366435 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 4 |
| ERR1366436 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 4 |
| ERR1366437 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 4 |
| ERR1366438 | Sahara | germinating seed 3d | Root elongation zone | 100mM NaCl | 4 |
| ERR1366439 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 1 |
| ERR1366440 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 1 |
| ERR1366441 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 1 |
| ERR1366442 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 1 |
| ERR1366443 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 2 |
| ERR1366444 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 2 |
| ERR1366445 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 2 |
| ERR1366446 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 2 |
| ERR1366447 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 3 |
| ERR1366448 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 3 |
| ERR1366449 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 3 |
| ERR1366450 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 3 |
| ERR1366451 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 4 |
| ERR1366452 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 4 |
| ERR1366453 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 4 |
| ERR1366454 | Sahara | germinating seed 3d | Root maturation zone | 100mM NaCl | 4 |
| Run | Accession | Tissue | Treatment | Replicate | |
|---|---|---|---|---|---|
| ERR1744565 | Igri | leaf | 0h,17°C; Afternoon; mix | 1 | |
| ERR1744566 | Igri | leaf | 0h,17°C; Morning; mix | 1 | |
| ERR1744567 | Igri | leaf | 8h,6°C; Afternoon | 2 | |
| ERR1744568 | Igri | leaf | 8h,6°C; Afternoon | 3 | |
| ERR1744569 | Igri | leaf | 8h,6°C; Afternoon | 4 | |
| ERR1744570 | Igri | leaf | 4 weeks 6°C; Morning; mix | 1 | |
| ERR1744571 | Igri | leaf | 9 weeks 6°C; Morning | 1 | |
| ERR1744572 | Igri | leaf | 9 weeks 6°C; Morning | 2 | |
| ERR1744573 | Igri | leaf | 9 weeks 6°C; Morning | 3 | |
| ERR1744574 | Igri | leaf | 9 weeks 6°C; Morning; mix | 1 |
| Run | Tissue | Treatment | Replicate |
|---|---|---|---|
| ERR4704277 | leaf | Drought | replicate 1 |
| ERR4704278 | leaf | Drought | replicate 2 |
| ERR4704279 | leaf | Drought | replicate 3 |
| ERR4704280 | leaf | Well watered | replicate 1 |
| ERR4704281 | leaf | Well watered | replicate 2 |
| ERR4704282 | leaf | Well watered | replicate 3 |
| ERR4704283 | leaf | Drought | replicate 1 |
| ERR4704284 | leaf | Drought | replicate 2 |
| ERR4704285 | leaf | Drought | replicate 3 |
| ERR4704286 | leaf | Well watered | replicate 1 |
| ERR4704287 | leaf | Well watered | replicate 2 |
| ERR4704288 | leaf | Well watered | replicate 3 |
| Run | Accession | Stage | Treatment | Replicate |
|---|---|---|---|---|
| ERR781039 | S42-IL107 | Waddington stage 0.5 | 8h light/ 16h dark | 1.1 |
| ERR781040 | S42-IL107 | Waddington stage 0.5 | 8h light/ 16h dark | 1.2 |
| ERR781041 | S42-IL107 | Waddington stage 0.5 | 8h light/ 16h dark | 1.3 |
| ERR781042 | Scarlett | Waddington stage 1.0 | 16h light/ 8h dark | 2.1 |
| ERR781044 | Scarlett | Waddington stage 1.0 | 16h light/ 8h dark | 2.3 |
| ERR781045 | S42-IL107 | Waddington stage 1.0 | 16h light/ 8h dark | 3.1 |
| ERR781046 | S42-IL107 | Waddington stage 1.0 | 16h light/ 8h dark | 3.2 |
| ERR781047 | S42-IL107 | Waddington stage 1.0 | 16h light/ 8h dark | 3.3 |
| ERR781048 | S42-IL107 | Waddington stage 2.0 | 16h light/ 8h dark | 4.1 |
| ERR781049 | S42-IL107 | Waddington stage 2.0 | 16h light/ 8h dark | 4.2 |
| ERR781050 | S42-IL107 | Waddington stage 2.0 | 16h light/ 8h dark | 5.1 |
| ERR781051 | S42-IL107 | Waddington stage 2.0 | 16h light/ 8h dark | 5.2 |
| ERR781056 | S42-IL017 | Waddington stage 2.0 | 8h light/ 16h dark | 7.1 |
| ERR781057 | S42-IL017 | Waddington stage 2.0 | 8h light/ 16h dark | 7.2 |
| ERR781058 | S42-IL107 | Waddington stage 2.0 | 8h light/ 16h dark | 7.3 |
| ERR781059 | S42-IL107 | Waddington stage 1.0 | 8h light/ 16h dark | 8.1 |
| ERR781061 | S42-IL107 | Waddington stage 1.0 | 8h light/ 16h dark | 8.3 |
| ERR781062 | Scarlett | Waddington stage 1.0 | 16h light/ 8h dark | 9.1 |
| ERR781063 | Scarlett | Waddington stage 1.0 | 16h light/ 8h dark | 9.2 |
| ERR781066 | S42-IL107 | Waddington stage 1.0 | 8h light/ 16h dark | 10.2 |
| ERR781068 | Scarlett | Waddington stage 2.0 | 8h light/ 16h dark | 11.1 |
| ERR781069 | Scarlett | Waddington stage 2.0 | 8h light/ 16h dark | 11.2 |
| ERR781074 | S42-IL107 | Waddington stage 2.0 | 8h light/ 16h dark | 13.1 |
| ERR781075 | S42-IL107 | Waddington stage 2.0 | 8h light/ 16h dark | 13.2 |
| ERR781076 | S42-IL107 | Waddington stage 2.0 | 8h light/ 16h dark | 13.3 |
| ERR781079 | Scarlett | Waddington stage 3.5 | 16h light/ 8h dark | 14.3 |
| ERR781080 | S42-IL107 | Waddington stage 1.0 | 8h light/ 16h dark | 15.1 |
| ERR781083 | S42-IL107 | Waddington stage 3.5 | 8h light/ 16h dark | 16.1 |
| ERR781084 | S42-IL107 | Waddington stage 3.5 | 8h light/ 16h dark | 16.2 |
| ERR781085 | S42-IL107 | Waddington stage 3.5 | 8h light/ 16h dark | 16.3 |
| ERR781043 | Scarlett | Waddington stage 1.0 | 16h light/ 8h dark | 2.2 |
| ERR781052 | S42-IL107 | Waddington stage 2.0 | 16h light/ 8h dark | 5.3 |
| ERR781053 | Scarlett | Waddington stage 2.0 | 16h light/ 8h dark | 6.1 |
| ERR781054 | Scarlett | Waddington stage 2.0 | 16h light/ 8h dark | 6.2 |
| ERR781055 | Scarlett | Waddington stage 2.0 | 16h light/ 8h dark | 6.3 |
| ERR781060 | S42-IL107 | Waddington stage 1.0 | 8h light/ 16h dark | 8.2 |
| ERR781064 | Scarlett | Waddington stage 1.0 | 16h light/ 8h dark | 9.3 |
| ERR781065 | S42-IL107 | Waddington stage 1.0 | 16h light/ 8h dark | 10.1 |
| ERR781067 | S42-IL107 | Waddington stage 1.0 | 16h light/ 8h dark | 10.3 |
| ERR781070 | Scarlett | Waddington stage 2.0 | 16h light/ 8h dark | 11.3 |
| ERR781071 | S42-IL107 | Waddington stage 3.5 | 16h light/ 8h dark | 12.1 |
| ERR781072 | S42-IL107 | Waddington stage 3.5 | 16h light/ 8h dark | 12.2 |
| ERR781073 | S42-IL107 | Waddington stage 3.5 | 16h light/ 8h dark | 12.3 |
| ERR781077 | Scarlett | Waddington stage 3.5 | 16h light/ 8h dark | 14.1 |
| ERR781078 | Scarlett | Waddington stage 3.5 | 16h light/ 8h dark | 14.2 |
| ERR781081 | S42-IL107 | Waddington stage 1.0 | 8h light/ 16h dark | 15.2 |
| ERR781082 | S42-IL107 | Waddington stage 1.0 | 8h light/ 16h dark | 15.3 |
| Run | Accession | Stage | Treatment | Replicate |
|---|---|---|---|---|
| SRR3137023 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium | Rep 1 |
| SRR3137027 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 2 |
| SRR3137028 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 3 |
| SRR3137030 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 1 |
| SRR3137052 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 2 |
| SRR3137061 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 3 |
| SRR3137062 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 1 |
| SRR3137064 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 2 |
| SRR3137066 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 3 |
| SRR3137070 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 1 |
| SRR3137071 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 2 |
| SRR3137072 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 3 |
| SRR3137073 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 1 |
| SRR3137074 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 2 |
| SRR3137075 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 3 |
| SRR3137076 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 1 |
| SRR3137082 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 2 |
| SRR3137094 | Lacey and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 3 |
| SRR3137095 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 1 |
| SRR3137096 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 2 |
| SRR3137097 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 3 |
| SRR3137098 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 1 |
| SRR3137103 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 2 |
| SRR3137104 | Lacey and IL | 2-3 days after their complete emergence from the boot | water | Rep 3 |
| SRR3137105 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 1 |
| SRR3137106 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 2 |
| SRR3137107 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 3 |
| SRR3137109 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 1 |
| SRR3137110 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 2 |
| SRR3137111 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 3 |
| SRR3137115 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 1 |
| SRR3137118 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 2 |
| SRR3137119 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 3 |
| SRR3137120 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 1 |
| SRR3137121 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 2 |
| SRR3137122 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 3 |
| SRR3137125 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 1 |
| SRR3137127 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 2 |
| SRR3137130 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 3 |
| SRR3137131 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 1 |
| SRR3137134 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 2 |
| SRR3137137 | M69 and IL | 2-3 days after their complete emergence from the boot | Fusarium graminearum | Rep 3 |
| SRR3137138 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 1 |
| SRR3137139 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 2 |
| SRR3137140 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 3 |
| SRR3137146 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 1 |
| SRR3137149 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 2 |
| SRR3137150 | M69 and IL | 2-3 days after their complete emergence from the boot | water | Rep 3 |
| Run | Accession | Tissue | Treatment | Replicate |
|---|---|---|---|---|
| SRR3224792 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 3 |
| SRR3290245 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290246 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290247 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290248 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290249 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290250 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290251 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290252 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290253 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290254 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290255 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290256 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290257 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290258 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290259 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290260 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290261 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290262 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290263 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290264 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290265 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290266 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290267 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290268 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290269 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290270 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290271 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290272 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290273 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290274 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290275 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 3 |
| SRR3290276 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290277 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290278 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290279 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290280 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290281 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290282 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 3 |
| SRR3290283 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290284 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290285 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290286 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290287 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290288 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290289 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 3 |
| SRR3290290 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290291 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290292 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290293 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290294 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290295 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290296 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 3 |
| SRR3290297 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290298 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290299 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 3 |
| SRR3290300 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290301 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290302 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 3 |
| SRR3290303 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290304 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290305 | Morex WT | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 3 |
| SRR3290306 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290307 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290308 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 3 |
| SRR3290309 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 3 |
| SRR3290310 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 1 |
| SRR3290311 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 2 |
| SRR3290312 | Morex Mutant 14-40 | seedling | Inoculated, spot blotch, early infection(12-36 hours after inoculation) | 3 |
| SRR3290313 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290314 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290315 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 3 |
| SRR3290316 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290317 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290318 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 3 |
| SRR3290319 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290320 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290321 | Morex WT | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 3 |
| SRR3290322 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290323 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290324 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 3 |
| SRR3290325 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290326 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290327 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 3 |
| SRR3290328 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 1 |
| SRR3290329 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 2 |
| SRR3290330 | Morex Mutant 14-40 | seedling | Mock (water)-Inoculated, water control, 12-36 hours after mock-inoculation | 3 |
| Run | Accession | Tissue | Treatment | Replicate |
|---|---|---|---|---|
| SRR3618865 | Rolap | shoot tissue | 22°C | 1 |
| SRR3618866 | Rolap | shoot tissue | 22°C | 2 |
| SRR3618867 | Rolap | shoot tissue | 22°C | 3 |
| SRR3618868 | Rolap | shoot tissue | 35.5°C | 1 |
| SRR3618869 | Rolap | shoot tissue | 35.5°C | 2 |
| SRR3618870 | Rolap | shoot tissue | 35.5°C | 3 |
| SRR3618871 | Rolap | root tissue | 22°C | 1 |
| SRR3618872 | Rolap | root tissue | 22°C | 2 |
| SRR3618873 | Rolap | root tissue | 35.5°C | 1 |
| SRR3618874 | Rolap | root tissue | 35.5°C | 2 |
| Run | Age | Tissue |
|---|---|---|
| SRR5331853 | 15 to 40 days | grain |
| SRR5331854 | 15 to 40 days | grain |
| SRR5331855 | 15 to 40 days | grain |
| SRR5331856 | 15 to 40 days | grain |
| SRR5331857 | 15 to 40 days | grain |
| SRR5331858 | 15 to 40 days | grain |
| SRR5331859 | 15 to 40 days | grain |
| SRR5331860 | 15 to 40 days | grain |
| SRR5331861 | 15 to 40 days | grain |
| SRR5331862 | 15 to 40 days | grain |
| SRR5331863 | 15 to 40 days | grain |
| SRR5331864 | 15 to 40 days | grain |
| SRR5331865 | 15 to 40 days | grain |
| SRR5331866 | 15 to 40 days | grain |
| SRR5331867 | 15 to 40 days | grain |
| SRR5331868 | 15 to 40 days | grain |
| SRR5331869 | 15 to 40 days | grain |
| SRR5331870 | 15 to 40 days | grain |
| SRR5331871 | 15 to 40 days | grain |
| SRR5331872 | 15 to 40 days | grain |
| SRR5331873 | 15 to 40 days | grain |
| SRR5331874 | 15 to 40 days | grain |
| SRR5331875 | 15 to 40 days | grain |
| SRR5331876 | 15 to 40 days | grain |
| Run | Accession | Stage | Tissue | Replicate |
|---|---|---|---|---|
| SRR5452097 | Morex | roots | 80 µM Cd | biological replicate 3 |
| SRR5452098 | Morex | shoots | 80 µM Cd | biological replicate 3 |
| SRR5452099 | Morex | roots | 80 µM Cd | biological replicate 2 |
| SRR5452100 | Morex | shoots | 80 µM Cd | biological replicate 2 |
| SRR5452101 | Morex | roots | 80 µM Cd | biological replicate 1 |
| SRR5452102 | Morex | shoots | 80 µM Cd | biological replicate 1 |
| SRR5452103 | Morex | roots | control Cd | biological replicate 3 |
| SRR5452104 | Morex | shoots | control Cd | biological replicate 3 |
| SRR5452105 | Morex | roots | control Cd | biological replicate 2 |
| SRR5452106 | Morex | shoots | control Cd | biological replicate 2 |
| SRR5452107 | Morex | roots | control Cd | biological replicate 1 |
| SRR5452108 | Morex | shoots | control Cd | biological replicate 1 |
| SRR5452109 | Morex | roots | 570 µM Zn | biological replicate 3 |
| SRR5452110 | Morex | shoots | 570 µM Zn | biological replicate 3 |
| SRR5452111 | Morex | roots | 570 µM Zn | biological replicate 2 |
| SRR5452112 | Morex | shoots | 570 µM Zn | biological replicate 2 |
| SRR5452113 | Morex | roots | 570 µM Zn | biological replicate 1 |
| SRR5452114 | Morex | shoots | 570 µM Zn | biological replicate 1 |
| SRR5452115 | Morex | roots | control Zn | biological replicate 3 |
| SRR5452116 | Morex | shoots | control Zn | biological replicate 3 |
| SRR5452117 | Morex | roots | control Zn | biological replicate 2 |
| SRR5452118 | Morex | shoots | control Zn | biological replicate 2 |
| SRR5452119 | Morex | roots | control Zn | biological replicate 1 |
| SRR5452120 | Morex | shoots | control Zn | biological replicate 1 |
| SRR5452121 | Morex | roots | 50 µM Cu | biological replicate 3 |
| SRR5452122 | Morex | shoots | 50 µM Cu | biological replicate 3 |
| SRR5452123 | Morex | roots | 50 µM Cu | biological replicate 2 |
| SRR5452124 | Morex | shoots | 50 µM Cu | biological replicate 2 |
| SRR5452125 | Morex | roots | 50 µM Cu | biological replicate 1 |
| SRR5452126 | Morex | shoots | 50 µM Cu | biological replicate 1 |
| SRR5452127 | Morex | roots | control Cu | biological replicate 3 |
| SRR5452128 | Morex | shoots | control Cu | biological replicate 3 |
| SRR5452129 | Morex | roots | control Cu | biological replicate 2 |
| SRR5452130 | Morex | shoots | control Cu | biological replicate 2 |
| SRR5452131 | Morex | roots | control Cu | biological replicate 1 |
| SRR5452132 | Morex | shoots | control Cu | biological replicate 1 |
| Run | Accession | Tissue | Treatment |
|---|---|---|---|
| SRR5992410 | BI-04 | shoots | 0h |
| SRR5992411 | BI-04 | shoots | 1h |
| SRR5992408 | BI-04 | shoots | 24h |
| SRR5992409 | BI-45 | shoots | 0h |
| SRR5992406 | BI-45 | shoots | 1h |
| SRR5992407 | BI-45 | shoots | 24h |
| SRR5992404 | BI-04 | roots | 0h |
| SRR5992405 | BI-04 | roots | 1h |
| SRR5992402 | BI-04 | roots | 24h |
| SRR5992403 | BI-45 | roots | 0h |
| SRR5992412 | BI-45 | roots | 1h |
| SRR5992413 | BI-45 | roots | 24h |
| Run | Accession | Age | Tissue | Treatment | Replicate |
|---|---|---|---|---|---|
| SRR6655989 | GN121 | 3 days | root | normal phosphorus | 1 |
| SRR6655982 | GN121 | 3 days | root | normal phosphorus | 2 |
| SRR6655942 | GN121 | 3 days | root | normal phosphorus | 3 |
| SRR6655985 | GN121 | 3 days | leaf | normal phosphorus | 1 |
| SRR6655968 | GN121 | 3 days | leaf | normal phosphorus | 2 |
| SRR6655970 | GN121 | 3 days | leaf | normal phosphorus | 3 |
| SRR6655946 | GN121 | 19 days | root | normal phosphorus | 1 |
| SRR6655950 | GN121 | 19 days | root | normal phosphorus | 2 |
| SRR6655981 | GN121 | 19 days | root | normal phosphorus | 3 |
| SRR6655939 | GN121 | 19 days | leaf | normal phosphorus | 1 |
| SRR6655947 | GN121 | 19 days | leaf | normal phosphorus | 2 |
| SRR6655941 | GN121 | 19 days | leaf | normal phosphorus | 3 |
| SRR6655949 | GN121 | 3 days | root | low phosphorus | 1 |
| SRR6655948 | GN121 | 3 days | root | low phosphorus | 2 |
| SRR6655951 | GN121 | 3 days | root | low phosphorus | 3 |
| SRR6655938 | GN121 | 3 days | leaf | low phosphorus | 1 |
| SRR6655953 | GN121 | 3 days | leaf | low phosphorus | 2 |
| SRR6655952 | GN121 | 3 days | leaf | low phosphorus | 3 |
| SRR6655965 | GN121 | 19 days | root | low phosphorus | 1 |
| SRR6655964 | GN121 | 19 days | root | low phosphorus | 2 |
| SRR6655990 | GN121 | 19 days | root | low phosphorus | 3 |
| SRR6655991 | GN121 | 19 days | leaf | low phosphorus | 1 |
| SRR6655992 | GN121 | 19 days | leaf | low phosphorus | 2 |
| SRR6655993 | GN121 | 19 days | leaf | low phosphorus | 3 |
| SRR6655986 | GN121 | 22 days | root | low phosphorus | 1 |
| SRR6655987 | GN121 | 22 days | root | low phosphorus | 2 |
| SRR6655988 | GN121 | 22 days | root | low phosphorus | 3 |
| SRR6655940 | GN121 | 22 days | leaf | low phosphorus | 1 |
| SRR6655984 | GN121 | 22 days | leaf | low phosphorus | 2 |
| SRR6655983 | GN121 | 22 days | leaf | low phosphorus | 3 |
| SRR6655955 | GN121 | 22 days | root | recovery with normal phosphorus | 1 |
| SRR6655954 | GN121 | 22 days | root | recovery with normal phosphorus | 2 |
| SRR6655944 | GN121 | 22 days | root | recovery with normal phosphorus | 3 |
| SRR6655943 | GN121 | 22 days | leaf | recovery with normal phosphorus | 1 |
| SRR6655980 | GN121 | 22 days | leaf | recovery with normal phosphorus | 2 |
| SRR6655979 | GN121 | 22 days | leaf | recovery with normal phosphorus | 3 |
| SRR6655973 | GN42 | 3 days | root | normal phosphorus | 1 |
| SRR6655974 | GN42 | 3 days | root | normal phosphorus | 2 |
| SRR6655969 | GN42 | 3 days | root | normal phosphorus | 3 |
| SRR6655945 | GN42 | 3 days | leaf | normal phosphorus | 1 |
| SRR6656002 | GN42 | 3 days | leaf | normal phosphorus | 2 |
| SRR6656003 | GN42 | 3 days | leaf | normal phosphorus | 3 |
| SRR6655975 | GN42 | 19 days | root | normal phosphorus | 1 |
| SRR6655976 | GN42 | 19 days | root | normal phosphorus | 2 |
| SRR6655977 | GN42 | 19 days | root | normal phosphorus | 3 |
| SRR6655978 | GN42 | 19 days | leaf | normal phosphorus | 1 |
| SRR6655971 | GN42 | 19 days | leaf | normal phosphorus | 2 |
| SRR6655972 | GN42 | 19 days | leaf | normal phosphorus | 3 |
| SRR6655957 | GN42 | 3 days | root | low phosphorus | 1 |
| SRR6655956 | GN42 | 3 days | root | low phosphorus | 2 |
| SRR6655959 | GN42 | 3 days | root | low phosphorus | 3 |
| SRR6655958 | GN42 | 3 days | leaf | low phosphorus | 1 |
| SRR6655967 | GN42 | 3 days | leaf | low phosphorus | 2 |
| SRR6655966 | GN42 | 3 days | leaf | low phosphorus | 3 |
| SRR6656004 | GN42 | 19 days | root | low phosphorus | 1 |
| SRR6656005 | GN42 | 19 days | root | low phosphorus | 2 |
| SRR6656006 | GN42 | 19 days | root | low phosphorus | 3 |
| SRR6656007 | GN42 | 19 days | leaf | low phosphorus | 1 |
| SRR6656008 | GN42 | 19 days | leaf | low phosphorus | 2 |
| SRR6656009 | GN42 | 19 days | leaf | low phosphorus | 3 |
| SRR6655994 | GN42 | 22 days | root | low phosphorus | 1 |
| SRR6655995 | GN42 | 22 days | root | low phosphorus | 2 |
| SRR6655961 | GN42 | 22 days | root | low phosphorus | 3 |
| SRR6655960 | GN42 | 22 days | leaf | low phosphorus | 1 |
| SRR6655963 | GN42 | 22 days | leaf | low phosphorus | 2 |
| SRR6655962 | GN42 | 22 days | leaf | low phosphorus | 3 |
| SRR6656000 | GN42 | 22 days | root | recovery with normal phosphorus | 1 |
| SRR6656001 | GN42 | 22 days | root | recovery with normal phosphorus | 2 |
| SRR6655998 | GN42 | 22 days | root | recovery with normal phosphorus | 3 |
| SRR6655999 | GN42 | 22 days | leaf | recovery with normal phosphorus | 1 |
| SRR6655996 | GN42 | 22 days | leaf | recovery with normal phosphorus | 2 |
| SRR6655997 | GN42 | 22 days | leaf | recovery with normal phosphorus | 3 |
| Run | Accession | Tissue | Treatment | Replicate |
|---|---|---|---|---|
| SRR6869705 | Scarlett | Root zone C | water deficit | 2 |
| SRR6869706 | Scarlett | Root zone C | water deficit | 1 |
| SRR6869707 | Scarlett | Root zone C | water deficit | 4 |
| SRR6869708 | Scarlett | Root zone C | water deficit | 3 |
| SRR6869709 | Scarlett | Root zone B | water deficit | 3 |
| SRR6869710 | Scarlett | Root zone B | control | 4 |
| SRR6869711 | Scarlett | Root zone A | water deficit | 3 |
| SRR6869712 | Scarlett | Root zone A | water deficit | 4 |
| SRR6869713 | Scarlett | Root zone B | water deficit | 1 |
| SRR6869714 | Scarlett | Root zone B | water deficit | 2 |
| SRR6869715 | Scarlett | Root zone C | control | 3 |
| SRR6869716 | Scarlett | Root zone C | control | 4 |
| SRR6869717 | Scarlett | Root zone A | water deficit | 1 |
| SRR6869718 | Scarlett | Root zone A | water deficit | 2 |
| SRR6869719 | Scarlett | Root zone C | control | 1 |
| SRR6869720 | Scarlett | Root zone C | control | 2 |
| SRR6869721 | Scarlett | Root zone A | control | 1 |
| SRR6869722 | Scarlett | Root zone A | control | 2 |
| SRR6869723 | Scarlett | Root zone A | control | 3 |
| SRR6869724 | Scarlett | Root zone A | control | 4 |
| SRR6869725 | Scarlett | Root zone B | control | 1 |
| SRR6869726 | Scarlett | Root zone B | control | 2 |
| SRR6869727 | Scarlett | Root zone B | control | 3 |
| SRR6869728 | Scarlett | Root zone B | control | 4 |
| Run | Accession | Stage | Tissue |
|---|---|---|---|
| SRR15465685 | Barke | 3rd stem internode | 3rd stem internode |
| SRR15465689 | Barke | Lodicule day 55 | Lodicule |
| SRR15465693 | Barke | Day 6 shoot apex | Shoot Apex |
| SRR15465694 | Barke | Developing grain 5 dpa | Developing grain |
| SRR15465695 | Barke | 50 day inflourescence | Inflorescence |
| SRR15465696 | Barke | Salt stress embroyos | Embroyo |
| SRR15465697 | Barke | Hot stress coleoptiles | Coleoptile |
| SRR15465698 | Barke | Rhynchosporium infected leaf 3dpi\, 9dpi | Leaf |
| SRR15465684 | Barke | Palea day 55 | Palea |
| SRR15465686 | Barke | 23 day roots | Root |
| SRR15465687 | Barke | 6 day embroyo | Embroyo |
| SRR15465688 | Barke | Day 35 root | Root |
| SRR15465690 | Barke | Day 14 seedling | Leaf |
| SRR15465691 | Barke | Etoliated Leaf | Leaf |
| SRR15465692 | Barke | 35 day inflourescence | Inflorescence |
| SRR15465699 | Barke | Peduncle | Peduncle |
| SRR15465700 | Barke | Cold stress coleoptiles | Coleoptile |
| SRR15465701 | Barke | 15 dpa developing grain | Developing grain |
| SRR15465702 | Barke | Rachis day 55 | Rachis |
| SRR15465703 | Barke | Lemma day 55 | Lemma |
| Run | Accession | Tissue | Treatment | Replicate |
|---|---|---|---|---|
| SRR10150523 | B968 | leaf | low nitrogen | replicate 1 |
| SRR10150522 | B968 | leaf | low nitrogen | replicate 2 |
| SRR10150521 | B968 | leaf | normal nitrogen | replicate 1 |
| SRR10150520 | B968 | leaf | normal nitrogen | replicate 2 |
| Run | Accession | Tissue | Treatment | Replicate |
|---|---|---|---|---|
| SRR10951966 | Deder2 | root | control 0h | replicate1 |
| SRR10951967 | Deder2 | root | control 0h | replicate2 |
| SRR10951968 | Deder2 | root | control 0h | replicate3 |
| SRR10951969 | Deder2 | root | control 0h | replicate4 |
| SRR10951974 | Deder2 | root | control 72h | replicate1 |
| SRR10951975 | Deder2 | root | control 72h | replicate2 |
| SRR10951976 | Deder2 | root | control 72h | replicate3 |
| SRR10951977 | Deder2 | root | control 72h | replicate4 |
| SRR10951982 | Deder2 | root | waterlogged 72h | replicate1 |
| SRR10951983 | Deder2 | root | waterlogged 72h | replicate2 |
| SRR10951984 | Deder2 | root | waterlogged 72h | replicate3 |
| SRR10951985 | Deder2 | root | waterlogged 72h | replicate4 |
| SRR10951990 | Deder2 | root | control 120h | replicate1 |
| SRR10951991 | Deder2 | root | control 120h | replicate2 |
| SRR10951992 | Deder2 | root | control 120h | replicate3 |
| SRR10951993 | Deder2 | root | control 120h | replicate4 |
| SRR10951994 | Deder2 | root | waterlogged 120h | replicate1 |
| SRR10951995 | Deder2 | root | waterlogged 120h | replicate2 |
| SRR10951996 | Deder2 | root | waterlogged 120h | replicate3 |
| SRR10951997 | Deder2 | root | waterlogged 120h | replicate4 |
| SRR10951970 | Yerong | root | control 0h | replicate1 |
| SRR10951971 | Yerong | root | control 0h | replicate2 |
| SRR10951972 | Yerong | root | control 0h | replicate3 |
| SRR10951973 | Yerong | root | control 0h | replicate4 |
| SRR10951978 | Yerong | root | control 72h | replicate1 |
| SRR10951979 | Yerong | root | control 72h | replicate2 |
| SRR10951980 | Yerong | root | control 72h | replicate3 |
| SRR10951981 | Yerong | root | control 72h | replicate4 |
| SRR10951986 | Yerong | root | waterlogged 72h | replicate1 |
| SRR10951987 | Yerong | root | waterlogged 72h | replicate2 |
| SRR10951988 | Yerong | root | waterlogged 72h | replicate3 |
| SRR10951989 | Yerong | root | waterlogged 72h | replicate4 |
| Run | Accession | Tissue | treatment | Replicate |
|---|---|---|---|---|
| SRR13765035 | Sebastian | root | 48h at pH=6 | replicate 1 |
| SRR13765036 | Sebastian | root | 48h at pH=6 | replicate 2 |
| SRR13765037 | Sebastian | root | 48h at pH=6 | replicate 3 |
| SRR13765038 | Sebastian | root | 48h at pH=4 | replicate 1 |
| SRR13765039 | Sebastian | root | 48h at pH=4 | replicate 2 |
| SRR13765040 | Sebastian | root | 48h at pH=4 | replicate 3 |
| SRR13765041 | Sebastian | root | 48h at pH=4 + 24h Al treatment at pH=4 | replicate 1 |
| SRR13765042 | Sebastian | root | 48h at pH=4 + 24h Al treatment at pH=4 | replicate 2 |
| SRR13765043 | Sebastian | root | 48h at pH=4 + 24h Al treatment at pH=4 | replicate 3 |
| SRR13765044 | Sebastian | root | 9d at pH=6 | replicate 1 |
| SRR13765045 | Sebastian | root | 9d at pH=6 | replicate 2 |
| SRR13765046 | Sebastian | root | 9d at pH=6 | replicate 3 |
| SRR13765047 | Sebastian | root | 9d at pH=4 | replicate 1 |
| SRR13765048 | Sebastian | root | 9d at pH=4 | replicate 2 |
| SRR13765049 | Sebastian | root | 9d at pH=4 | replicate 3 |
| SRR13765050 | Sebastian | root | 2d at pH=4 + 7d Al treatment at pH=4 | replicate 1 |
| SRR13765051 | Sebastian | root | 2d at pH=4 + 7d Al treatment at pH=4 | replicate 2 |
| SRR13765052 | Sebastian | root | 2d at pH=4 + 7d Al treatment at pH=4 | replicate 3 |
| Run | Accession | Tissue | treatment | Replicate |
|---|---|---|---|---|
| SRR14467133 | CDC Kendall | Seed | NIV_72 hr | replicate1 |
| SRR14467137 | CDC Kendall | Seed | NIV_72 hr | replicate2 |
| SRR14467140 | CDC Kendall | Seed | NIV_72 hr | replicate3 |
| SRR14467135 | CDC Kendall | Seed | NIV_96 hr | replicate1 |
| SRR14467138 | CDC Kendall | Seed | NIV_96 hr | replicate2 |
| SRR14467142 | CDC Kendall | Seed | NIV_96 hr | replicate3 |
| SRR14467097 | CDC Kendall | Seed | MOCK_72 hr | replicate1 |
| SRR14467101 | CDC Kendall | Seed | MOCK_72 hr | replicate2 |
| SRR14467107 | CDC Kendall | Seed | MOCK_72 hr | replicate3 |
| SRR14467098 | CDC Kendall | Seed | MOCK_96 hr | replicate1 |
| SRR14467102 | CDC Kendall | Seed | MOCK_96 hr | replicate2 |
| SRR14467104 | CDC Kendall | Seed | MOCK_96 hr | replicate3 |
| SRR14467123 | CDC Kendall | Seed | 3ADON_72 hr | replicate1 |
| SRR14467125 | CDC Kendall | Seed | 3ADON_72 hr | replicate2 |
| SRR14467130 | CDC Kendall | Seed | 3ADON_72 hr | replicate3 |
| SRR14467120 | CDC Kendall | Seed | 3ADON_96 hr | replicate1 |
| SRR14467127 | CDC Kendall | Seed | 3ADON_96 hr | replicate2 |
| SRR14467129 | CDC Kendall | Seed | 3ADON_96 hr | replicate3 |
| SRR14467111 | CDC Kendall | Seed | 15ADON_72 hr | replicate1 |
| SRR14467112 | CDC Kendall | Seed | 15ADON_72 hr | replicate2 |
| SRR14467118 | CDC Kendall | Seed | 15ADON_72 hr | replicate3 |
| SRR14467109 | CDC Kendall | Seed | 15ADON_96 hr | replicate1 |
| SRR14467114 | CDC Kendall | Seed | 15ADON_96 hr | replicate2 |
| SRR14467117 | CDC Kendall | Seed | 15ADON_96 hr | replicate3 |
| SRR14467132 | Norman | Seed | NIV_72 hr | replicate1 |
| SRR14467136 | Norman | Seed | NIV_72 hr | replicate2 |
| SRR14467141 | Norman | Seed | NIV_72 hr | replicate3 |
| SRR14467134 | Norman | Seed | NIV_96 hr | replicate1 |
| SRR14467139 | Norman | Seed | NIV_96 hr | replicate2 |
| SRR14467143 | Norman | Seed | NIV_96 hr | replicate3 |
| SRR14467096 | Norman | Seed | MOCK_72 hr | replicate1 |
| SRR14467100 | Norman | Seed | MOCK_72 hr | replicate2 |
| SRR14467106 | Norman | Seed | MOCK_72 hr | replicate3 |
| SRR14467099 | Norman | Seed | MOCK_96 hr | replicate1 |
| SRR14467103 | Norman | Seed | MOCK_96 hr | replicate2 |
| SRR14467105 | Norman | Seed | MOCK_96 hr | replicate3 |
| SRR14467122 | Norman | Seed | 3ADON_72 hr | replicate1 |
| SRR14467124 | Norman | Seed | 3ADON_72 hr | replicate2 |
| SRR14467131 | Norman | Seed | 3ADON_72 hr | replicate3 |
| SRR14467121 | Norman | Seed | 3ADON_96 hr | replicate1 |
| SRR14467126 | Norman | Seed | 3ADON_96 hr | replicate2 |
| SRR14467128 | Norman | Seed | 3ADON_96 hr | replicate3 |
| SRR14467110 | Norman | Seed | 15ADON_72 hr | replicate1 |
| SRR14467113 | Norman | Seed | 15ADON_72 hr | replicate2 |
| SRR14467119 | Norman | Seed | 15ADON_72 hr | replicate3 |
| SRR14467108 | Norman | Seed | 15ADON_96 hr | replicate1 |
| SRR14467115 | Norman | Seed | 15ADON_96 hr | replicate2 |
| SRR14467116 | Norman | Seed | 15ADON_96 hr | replicate3 |
| Run | Accession | Stage | treatment | Replicate |
|---|---|---|---|---|
| SRR15068534 | Evergreen | young leaves at T1 | 6-day waterlogged | replicate1 |
| SRR15068543 | Evergreen | young leaves at T1 | 6-day waterlogged | replicate2 |
| SRR15068544 | Evergreen | young leaves at T1 | 6-day waterlogged | replicate3 |
| SRR15068536 | Evergreen | mature leaves at T1 | 6-day waterlogged | replicate1 |
| SRR15068537 | Evergreen | mature leaves at T1 | 6-day waterlogged | replicate2 |
| SRR15068538 | Evergreen | mature leaves at T1 | 6-day waterlogged | replicate3 |
| SRR15068504 | Evergreen | young leaves at T1 | 57-day-old controlled | replicate1 |
| SRR15068515 | Evergreen | young leaves at T1 | 57-day-old controlled | replicate2 |
| SRR15068539 | Evergreen | young leaves at T1 | 57-day-old controlled | replicate3 |
| SRR15068526 | Evergreen | mature leaves at T1 | 57-day-old controlled | replicate1 |
| SRR15068545 | Evergreen | mature leaves at T1 | 57-day-old controlled | replicate2 |
| SRR15068546 | Evergreen | mature leaves at T1 | 57-day-old controlled | replicate3 |
| SRR15068511 | Evergreen | young leaves at T2 | 6-day waterlogged | replicate1 |
| SRR15068510 | Evergreen | young leaves at T2 | 6-day waterlogged | replicate2 |
| SRR15068509 | Evergreen | young leaves at T2 | 6-day waterlogged | replicate3 |
| SRR15068514 | Evergreen | mature leaves at T2 | 6-day waterlogged | replicate1 |
| SRR15068513 | Evergreen | mature leaves at T2 | 6-day waterlogged | replicate2 |
| SRR15068512 | Evergreen | mature leaves at T2 | 6-day waterlogged | replicate3 |
| SRR15068518 | Evergreen | young leaves at T2 | 63-day-old controlled | replicate1 |
| SRR15068517 | Evergreen | young leaves at T2 | 63-day-old controlled | replicate2 |
| SRR15068516 | Evergreen | young leaves at T2 | 63-day-old controlled | replicate3 |
| SRR15068521 | Evergreen | mature leaves at T2 | 63-day-old controlled | replicate1 |
| SRR15068520 | Evergreen | mature leaves at T2 | 63-day-old controlled | replicate2 |
| SRR15068519 | Evergreen | mature leaves at T2 | 63-day-old controlled | replicate3 |
| SRR15068524 | Laurikka | young leaves at T1 | 6-day waterlogged | replicate1 |
| SRR15068523 | Laurikka | young leaves at T1 | 6-day waterlogged | replicate2 |
| SRR15068522 | Laurikka | young leaves at T1 | 6-day waterlogged | replicate3 |
| SRR15068528 | Laurikka | mature leaves at T1 | 6-day waterlogged | replicate1 |
| SRR15068527 | Laurikka | mature leaves at T1 | 6-day waterlogged | replicate2 |
| SRR15068525 | Laurikka | mature leaves at T1 | 6-day waterlogged | replicate3 |
| SRR15068531 | Laurikka | young leaves at T1 | 57-day-old controlled | replicate1 |
| SRR15068530 | Laurikka | young leaves at T1 | 57-day-old controlled | replicate2 |
| SRR15068529 | Laurikka | young leaves at T1 | 57-day-old controlled | replicate3 |
| SRR15068535 | Laurikka | mature leaves at T1 | 57-day-old controlled | replicate1 |
| SRR15068533 | Laurikka | mature leaves at T1 | 57-day-old controlled | replicate2 |
| SRR15068532 | Laurikka | mature leaves at T1 | 57-day-old controlled | replicate3 |
| SRR15068540 | Laurikka | young leaves at T2 | 6-day waterlogged | replicate1 |
| SRR15068541 | Laurikka | young leaves at T2 | 6-day waterlogged | replicate2 |
| SRR15068542 | Laurikka | young leaves at T2 | 6-day waterlogged | replicate3 |
| SRR15068499 | Laurikka | mature leaves at T2 | 6-day waterlogged | replicate1 |
| SRR15068500 | Laurikka | mature leaves at T2 | 6-day waterlogged | replicate2 |
| SRR15068501 | Laurikka | mature leaves at T2 | 6-day waterlogged | replicate3 |
| SRR15068502 | Laurikka | young leaves at T2 | 63-day-old controlled | replicate1 |
| SRR15068503 | Laurikka | young leaves at T2 | 63-day-old controlled | replicate2 |
| SRR15068505 | Laurikka | young leaves at T2 | 63-day-old controlled | replicate3 |
| SRR15068506 | Laurikka | mature leaves at T2 | 63-day-old controlled | replicate1 |
| SRR15068507 | Laurikka | mature leaves at T2 | 63-day-old controlled | replicate2 |
| SRR15068508 | Laurikka | mature leaves at T2 | 63-day-old controlled | replicate3 |
| Run | Library Name |
|---|---|
| SRR1087917 | C184 |
| SRR1087920 | C186 |
| SRR1087921 | C187 |
| SRR1087922 | C188 |
| SRR1087923 | C190 |
| SRR1087924 | C189 |
| SRR1087925 | C192 |
| SRR1087926 | C193 |
| SRR1087927 | W1 |
| SRR1087928 | W2 |
| SRR1087929 | W3 |
| SRR1087930 | W4 |
| SRR1087931 | W5 |
| SRR1087932 | W6 |
| SRR1087933 | W35 |
| SRR1087934 | W36 |
| SRR1087935 | W37 |
| SRR1087936 | W73 |
| SRR1087937 | W181 |
| SRR1087938 | W182 |
| SRR1084227 | C183 |
| Run | Accession | Tissue | Lat_Lon |
|---|---|---|---|
| SRR8279191 | Tabigha basalt:B08-10, 13 | 4th leaf | 32.87 N 35.54 E |
| SRR8279192 | Tabigha basalt:B08-10, 6 | 4th leaf | 32.87 N 35.55 E |
| SRR8279193 | Rosh Pinna:B08-2, 2 | 4th leaf | 32.97 N 35.56 E |
| SRR8279194 | Talpiyyot:B80-3, 18 | 4th leaf | 31.75 N 35.22 E |
| SRR8279195 | Talpiyyot:B80-3, 3 | 4th leaf | 31.75 N 35.22 E |
| SRR8279196 | Talpiyyot:B08-3, 2 | 4th leaf | 31.75 N 35.22 E |
| SRR8279197 | Mt. Hermon:B80-1, 13 | 4th leaf | 33.3 N 35.73 E |
| SRR8279198 | Mt. Hermon:B80-1, 16 | 4th leaf | 33.3 N 35.73 E |
| SRR8279199 | Mt. Hermon:B08-1, 8 | 4th leaf | 33.3 N 35.73 E |
| SRR8279200 | Rosh Pinna:B80-2, 9 | 4th leaf | 32.97 N 35.56 E |
| SRR8279201 | Talpiyyot:B08-3, 3 | 4th leaf | 31.75 N 35.22 E |
| SRR8279202 | Eyzariya:B80-4, 5 | 4th leaf | 31.77 N 35.27 E |
| SRR8279203 | Wadi Qilt:B80-8, 19 | 4th leaf | 31.84 N 35.40 E |
| SRR8279204 | Wadi Qilt:B80-8, 6 | 4th leaf | 31.84 N 35.40 E |
| SRR8279205 | Mehola:B08-7, 5 | 4th leaf | 32.37 N 35.52 E |
| SRR8279206 | Mehola:B80-7, 12 | 4th leaf | 32.37 N 35.52 E |
| SRR8279207 | Wadi Qilt:B80-8, 5 | 4th leaf | 31.84 N 35.40 E |
| SRR8279208 | Mehola:B08-7, 8 | 4th leaf | 32.37 N 35.52 E |
| SRR8279209 | Biet Shean:B80-6, 17 | 4th leaf | 32.50 N 35.50 E |
| SRR8279210 | Sede Boqer:B08-5, 7 | 4th leaf | 30.87 N 34.79 E |
| SRR8279211 | Mehola:B80-7, 4 | 4th leaf | 32.37 N 35.52 E |
| SRR8279212 | Biet Shean:B08-6, 6 | 4th leaf | 32.50 N 35.50 E |
| SRR8279213 | Tabigha basalt:B80-10, 19 | 4th leaf | 32.87 N 35.55 E |
| SRR8279214 | Tabigha basalt:B80-10, 19 | 4th leaf | 32.87 N 35.55 E |
| SRR8279215 | Tabigha terra rosa:B08-9, 8 | 4th leaf | 32.87 N 35.55 E |
| SRR8279216 | Tabigha terra rosa:B08-9, 17 | 4th leaf | 32.87 N 35.55 E |
| SRR8279217 | Tabigha terra rosa:B80-9, 14 | 4th leaf | 32.87 N 35.55 E |
| SRR8279218 | Tabigha terra rosa:B80-9, 15 | 4th leaf | 32.87 N 35.55 E |
| SRR8279219 | Wadi Qilt:B08-8, 19 | 4th leaf | 31.84 N 35.40 E |
| SRR8279220 | Wadi Qilt:B08-8, 20 | 4th leaf | 31.84 N 35.40 E |
| SRR8279221 | Wadi Qilt:B80-8, 8 | 4th leaf | 31.84 N 35.40 E |
| SRR8279222 | Wadi Qilt:B08-8, 13 | 4th leaf | 31.84 N 35.40 E |
| SRR8279223 | Eyzariya:B80-4, 4 | 4th leaf | 31.77 N 35.27 E |
| SRR8279224 | Eyzariya:B80-4, 10 | 4th leaf | 31.77 N 35.27 E |
| SRR8279225 | Eyzariya:B80-4, 16 | 4th leaf | 31.77 N 35.27 E |
| SRR8279226 | Eyzariya:B08-4, 16 | 4th leaf | 31.77 N 35.27 E |
| SRR8279227 | Eyzariya:B08-4, 2 | 4th leaf | 31.77 N 35.27 E |
| SRR8279228 | Eyzariya:B08-4, 17 | 4th leaf | 31.77 N 35.27 E |
| SRR8279229 | Sede Boqer:B80-5, 15 | 4th leaf | 30.87 N 34.79 E |
| SRR8279230 | Sede Boqer:B80-5, 17 | 4th leaf | 30.87 N 34.79 E |
| SRR8279231 | Sede Boqer:B08-5, 14 | 4th leaf | 30.87 N 34.79 E |
| SRR8279232 | Sede Boqer:B08-5, 16 | 4th leaf | 30.87 N 34.79 E |
| Run | Accession | Tissue | Treatment | Replicate |
|---|---|---|---|---|
| SRR12720034 | Basalt76 | root | wild barley accessions inhabiting Basalt soil | 1 |
| SRR12720036 | Basalt60 | root | wild barley accessions inhabiting Basalt soil | 2 |
| SRR12720037 | Basalt60 | root | wild barley accessions inhabiting Basalt soil | 1 |
| SRR12720038 | Terra Rossa169 | leaf | wild barley accessions inhabiting Terra Rossa soil | 3 |
| SRR12720040 | Terra Rossa169 | leaf | wild barley accessions inhabiting Terra Rossa soil | 1 |
| SRR12720042 | Terra Rossa166 | leaf | wild barley accessions inhabiting Terra Rossa soil | 2 |
| SRR12720047 | Terra Rossa110 | leaf | wild barley accessions inhabiting Terra Rossa soil | 3 |
| SRR12720048 | Basalt59 | root | wild barley accessions inhabiting Basalt soil | 3 |
| SRR12720051 | Terra Rossa109 | leaf | wild barley accessions inhabiting Terra Rossa soil | 3 |
| SRR12720055 | Basalt99 | leaf | wild barley accessions inhabiting Basalt soil | 2 |
| SRR12720058 | Basalt76 | leaf | wild barley accessions inhabiting Basalt soil | 2 |
| SRR12720059 | Basalt59 | root | wild barley accessions inhabiting Basalt soil | 2 |
| SRR12720060 | Basalt76 | leaf | wild barley accessions inhabiting Basalt soil | 1 |
| SRR12720061 | Basalt60 | leaf | wild barley accessions inhabiting Basalt soil | 3 |
| SRR12720064 | Basalt59 | leaf | wild barley accessions inhabiting Basalt soil | 3 |
| SRR12720065 | Basalt59 | leaf | wild barley accessions inhabiting Basalt soil | 2 |
| SRR12720066 | Basalt59 | leaf | wild barley accessions inhabiting Basalt soil | 1 |
| SRR12720068 | Basalt63 | leaf | wild barley accessions inhabiting Basalt soil | 2 |
| SRR12720073 | Terra Rossa169 | root | wild barley accessions inhabiting Terra Rossa soil | 1 |
| SRR12720074 | Terra Rossa166 | root | wild barley accessions inhabiting Terra Rossa soil | 3 |
| SRR12720078 | Terra Rossa161 | root | wild barley accessions inhabiting Terra Rossa soil | 2 |
| SRR12720079 | Terra Rossa161 | root | wild barley accessions inhabiting Terra Rossa soil | 1 |
| SRR12720080 | Terra Rossa110 | root | wild barley accessions inhabiting Terra Rossa soil | 3 |
| SRR12720084 | Terra Rossa109 | root | wild barley accessions inhabiting Terra Rossa soil | 3 |
| SRR12720085 | Terra Rossa109 | root | wild barley accessions inhabiting Terra Rossa soil | 2 |
| SRR12720087 | Basalt99 | root | wild barley accessions inhabiting Basalt soil | 3 |
| SRR12720088 | Basalt99 | root | wild barley accessions inhabiting Basalt soil | 2 |
| SRR12720091 | Basalt76 | root | wild barley accessions inhabiting Basalt soil | 2 |
| SRR12720035 | Basalt60 | root | wild barley accessions inhabiting Basalt soil | 3 |
| SRR12720039 | Terra Rossa169 | leaf | wild barley accessions inhabiting Terra Rossa soil | 2 |
| SRR12720041 | Terra Rossa166 | leaf | wild barley accessions inhabiting Terra Rossa soil | 3 |
| SRR12720043 | Terra Rossa166 | leaf | wild barley accessions inhabiting Terra Rossa soil | 1 |
| SRR12720044 | Terra Rossa161 | leaf | wild barley accessions inhabiting Terra Rossa soil | 3 |
| SRR12720045 | Terra Rossa161 | leaf | wild barley accessions inhabiting Terra Rossa soil | 2 |
| SRR12720046 | Terra Rossa161 | leaf | wild barley accessions inhabiting Terra Rossa soil | 1 |
| SRR12720049 | Terra Rossa110 | leaf | wild barley accessions inhabiting Terra Rossa soil | 2 |
| SRR12720050 | Terra Rossa110 | leaf | wild barley accessions inhabiting Terra Rossa soil | 1 |
| SRR12720052 | Terra Rossa109 | leaf | wild barley accessions inhabiting Terra Rossa soil | 2 |
| SRR12720053 | Terra Rossa109 | leaf | wild barley accessions inhabiting Terra Rossa soil | 1 |
| SRR12720054 | Basalt99 | leaf | wild barley accessions inhabiting Basalt soil | 3 |
| SRR12720056 | Basalt99 | leaf | wild barley accessions inhabiting Basalt soil | 1 |
| SRR12720057 | Basalt76 | leaf | wild barley accessions inhabiting Basalt soil | 3 |
| SRR12720062 | Basalt60 | leaf | wild barley accessions inhabiting Basalt soil | 2 |
| SRR12720063 | Basalt60 | leaf | wild barley accessions inhabiting Basalt soil | 1 |
| SRR12720067 | Basalt63 | leaf | wild barley accessions inhabiting Basalt soil | 3 |
| SRR12720069 | Basalt63 | leaf | wild barley accessions inhabiting Basalt soil | 1 |
| SRR12720070 | Basalt59 | root | wild barley accessions inhabiting Basalt soil | 1 |
| SRR12720071 | Terra Rossa169 | root | wild barley accessions inhabiting Terra Rossa soil | 3 |
| SRR12720072 | Terra Rossa169 | root | wild barley accessions inhabiting Terra Rossa soil | 2 |
| SRR12720075 | Terra Rossa166 | root | wild barley accessions inhabiting Terra Rossa soil | 2 |
| SRR12720076 | Terra Rossa166 | root | wild barley accessions inhabiting Terra Rossa soil | 1 |
| SRR12720077 | Terra Rossa161 | root | wild barley accessions inhabiting Terra Rossa soil | 3 |
| SRR12720081 | Basalt63 | root | wild barley accessions inhabiting Basalt soil | 3 |
| SRR12720082 | Terra Rossa110 | root | wild barley accessions inhabiting Terra Rossa soil | 2 |
| SRR12720083 | Terra Rossa110 | root | wild barley accessions inhabiting Terra Rossa soil | 1 |
| SRR12720086 | Terra Rossa109 | root | wild barley accessions inhabiting Terra Rossa soil | 1 |
| SRR12720089 | Basalt99 | root | wild barley accessions inhabiting Basalt soil | 1 |
| SRR12720090 | Basalt76 | root | wild barley accessions inhabiting Basalt soil | 3 |
| SRR12720092 | Basalt63 | root | wild barley accessions inhabiting Basalt soil | 2 |
| SRR12720093 | Basalt63 | root | wild barley accessions inhabiting Basalt soil | 1 |
| Run | Accession | Tissue |
|---|---|---|
| SRR15094364 | HS109 | leaves |
| SRR15094365 | HS108 | leaves |
| SRR15094366 | HS107 | leaves |
| SRR15094367 | HS106 | leaves |
| SRR15094368 | HS105 | leaves |
| SRR15094369 | HS104 | leaves |
| SRR15094370 | HS103 | leaves |
| SRR15094371 | Zhenongda no.3 | leaves |
| SRR15094372 | Zhenongda no.2 | leaves |
| SRR15094373 | Feite210 | leaves |
| SRR15094374 | Jinxingdamai | leaves |
| SRR15094375 | Hamidamai | leaves |
| SRR15094376 | Zhijiangheshangtou | leaves |
| SRR15094377 | Huangqingke | leaves |
| SRR15094378 | Beimai no.4 | leaves |
| SRR15094379 | Cixiyiyeqi | leaves |
| SRR15094380 | HS102 | leaves |
| SRR15094381 | Aibaiyang | leaves |
| SRR15094382 | HS56 | leaves |
| SRR15094383 | HS39 | leaves |
| SRR15094384 | HS38 | leaves |
| SRR15094385 | HS31 | leaves |
| SRR15094386 | HS30 | leaves |
| SRR15094387 | HS26 | leaves |
| SRR15094388 | HS23 | leaves |
| SRR15094389 | HS18 | leaves |
| SRR15094390 | HS7 | leaves |
| SRR15094391 | HS101 | leaves |
| SRR15094392 | HS100 | leaves |
| Run | Accession | Tissue | Treatment |
|---|---|---|---|
| SRR7853508 | X54 | LEAF EPIDERMAL CELLS | Drought |
| SRR7853509 | X54 | LEAF EPIDERMAL CELLS | Control |
| SRR7853510 | X5 | LEAF EPIDERMAL CELLS | Drought |
| SRR7853511 | X5 | LEAF EPIDERMAL CELLS | Control |
| Run | Age | Tissue | Replicate |
|---|---|---|---|
| SRR11670519 | 6 weeks | leaves | 2 |
| SRR11670520 | 6 weeks | leaves | 1 |
| SRR11670521 | 6 weeks | leaves | 3 |
| SRR11670522 | 6 weeks | leaves | 2 |
| SRR11670523 | 6 weeks | leaves | 1 |
| SRR11670524 | 6 weeks | leaves | 3 |
| SRR11670525 | 6 weeks | leaves | 2 |
| SRR11670526 | 6 weeks | leaves | 1 |
| SRR11670527 | 6 weeks | leaves | 3 |
| SRR11670528 | 6 weeks | leaves | 2 |
| SRR11670530 | 6 weeks | leaves | 1 |
| SRR11670531 | 6 weeks | leaves | 3 |
| SRR11670532 | 6 weeks | leaves | 2 |
| SRR11670533 | 6 weeks | leaves | 1 |
| SRR11670534 | 6 weeks | leaves | 3 |
| SRR11670535 | 6 weeks | leaves | 2 |
| SRR11670536 | 6 weeks | leaves | 1 |
| SRR11670537 | 6 weeks | leaves | 3 |
| SRR11670538 | 6 weeks | leaves | 2 |
| SRR11670539 | 6 weeks | leaves | 1 |
| SRR11670541 | 6 weeks | leaves | 3 |
| SRR11670542 | 6 weeks | leaves | 2 |
| SRR11670543 | 6 weeks | leaves | 1 |
| SRR11670544 | 6 weeks | leaves | 3 |
| SRR11670545 | 6 weeks | leaves | 2 |
| SRR11670546 | 6 weeks | leaves | 1 |
| SRR11670547 | 6 weeks | leaves | 3 |
| SRR11670548 | 6 weeks | leaves | 2 |
| SRR11670549 | 6 weeks | leaves | 1 |
| SRR11670550 | 6 weeks | leaves | 3 |
| SRR11670552 | 6 weeks | leaves | 2 |
| SRR11670553 | 6 weeks | leaves | 1 |
| SRR11670554 | 6 weeks | leaves | 3 |
| SRR11670555 | 6 weeks | leaves | 2 |
| SRR11670556 | 6 weeks | leaves | 1 |
| SRR11670557 | 6 weeks | leaves | 3 |
| SRR11670558 | 6 weeks | leaves | 2 |
| SRR11670559 | 6 weeks | leaves | 1 |
| SRR11670560 | 6 weeks | leaves | 3 |
| SRR11670561 | 6 weeks | leaves | 2 |
| SRR11670563 | 6 weeks | leaves | 1 |
| SRR11670564 | 6 weeks | leaves | 3 |
| SRR11670565 | 6 weeks | leaves | 2 |
| SRR11670566 | 6 weeks | leaves | 1 |
| SRR11670567 | 6 weeks | leaves | 3 |
| SRR11670568 | 6 weeks | leaves | 2 |
| SRR11670569 | 6 weeks | leaves | 1 |
| SRR11670570 | 6 weeks | leaves | 3 |
| SRR11670571 | 6 weeks | leaves | 2 |
| SRR11670572 | 6 weeks | leaves | 1 |
| SRR11670574 | 6 weeks | leaves | 3 |
| SRR11670575 | 6 weeks | leaves | 2 |
| SRR11670576 | 6 weeks | leaves | 1 |
| SRR11670577 | 6 weeks | leaves | 3 |
| SRR11670578 | 6 weeks | leaves | 2 |
| SRR11670579 | 6 weeks | leaves | 1 |
| SRR11670580 | 6 weeks | leaves | 3 |
| SRR11670581 | 6 weeks | leaves | 2 |
| SRR11670582 | 6 weeks | leaves | 1 |
| SRR11670583 | 6 weeks | leaves | 3 |
| SRR11670585 | 6 weeks | leaves | 2 |
| SRR11670586 | 6 weeks | leaves | 1 |
| SRR11670587 | 6 weeks | leaves | 3 |
| SRR11670588 | 6 weeks | leaves | 2 |
| SRR11670589 | 6 weeks | leaves | 1 |
| SRR11670590 | 6 weeks | leaves | 3 |
| SRR11670591 | 6 weeks | leaves | 2 |
| SRR11670592 | 6 weeks | leaves | 1 |
| SRR11670593 | 6 weeks | leaves | 3 |
| SRR11670598 | 6 weeks | leaves | 2 |
| SRR11670610 | 6 weeks | leaves | 1 |
| SRR11670621 | 6 weeks | leaves | 3 |
| SRR11670632 | 6 weeks | leaves | 2 |
| SRR11670643 | 6 weeks | leaves | 1 |
| SRR11670654 | 6 weeks | leaves | 3 |
| SRR11670665 | 6 weeks | leaves | 2 |
| SRR11670676 | 6 weeks | leaves | 1 |
| SRR11670687 | 6 weeks | leaves | 3 |
| SRR11670698 | 6 weeks | leaves | 2 |
| SRR11670709 | 6 weeks | leaves | 1 |
| SRR11670721 | 6 weeks | leaves | 3 |
| SRR11670732 | 6 weeks | leaves | 2 |
| SRR11670743 | 6 weeks | leaves | 1 |
| SRR11670767 | 6 weeks | leaves | 3 |
| SRR11670768 | 6 weeks | leaves | 2 |
| SRR11670769 | 6 weeks | leaves | 1 |
| SRR11670770 | 6 weeks | leaves | 3 |
| SRR11670771 | 6 weeks | leaves | 2 |
| SRR11670772 | 6 weeks | leaves | 1 |
| SRR11670773 | 6 weeks | leaves | 3 |
| SRR11670774 | 6 weeks | leaves | 2 |
| SRR11670775 | 6 weeks | leaves | 1 |
| SRR11670777 | 6 weeks | leaves | 3 |
| SRR11670778 | 6 weeks | leaves | 2 |
| SRR11670779 | 6 weeks | leaves | 1 |
| SRR11670780 | 6 weeks | leaves | 3 |
| SRR11670781 | 6 weeks | leaves | 2 |
| SRR11670782 | 6 weeks | leaves | 1 |
| SRR11670783 | 6 weeks | leaves | 3 |
| SRR11670784 | 6 weeks | leaves | 2 |
| SRR11670785 | 6 weeks | leaves | 1 |
| SRR11670786 | 6 weeks | leaves | 3 |
| SRR11670788 | 6 weeks | leaves | 2 |
| SRR11670789 | 6 weeks | leaves | 1 |
| SRR11670790 | 6 weeks | leaves | 3 |
| SRR11670791 | 6 weeks | leaves | 2 |
| SRR11670792 | 6 weeks | leaves | 1 |
| SRR11670793 | 6 weeks | leaves | 3 |
| SRR11670794 | 6 weeks | leaves | 2 |
| SRR11670795 | 6 weeks | leaves | 1 |
| SRR11670796 | 6 weeks | leaves | 3 |
| SRR11670797 | 6 weeks | leaves | 2 |
| SRR11670799 | 6 weeks | leaves | 1 |
| SRR11670800 | 6 weeks | leaves | 3 |
| SRR11670801 | 6 weeks | leaves | 2 |
| SRR11670802 | 6 weeks | leaves | 1 |
| SRR11670803 | 6 weeks | leaves | 3 |
| SRR11670804 | 6 weeks | leaves | 2 |
| SRR11670805 | 6 weeks | leaves | 1 |
| SRR11670806 | 6 weeks | leaves | 3 |
| SRR11670807 | 6 weeks | leaves | 2 |
| SRR11670808 | 6 weeks | leaves | 1 |
| SRR11670810 | 6 weeks | leaves | 3 |
| SRR11670811 | 6 weeks | leaves | 2 |
| SRR11670812 | 6 weeks | leaves | 1 |
| SRR11670813 | 6 weeks | leaves | 3 |
| SRR11670814 | 6 weeks | leaves | 2 |
| SRR11670815 | 6 weeks | leaves | 1 |
| SRR11670816 | 6 weeks | leaves | 3 |
| SRR11670817 | 6 weeks | leaves | 2 |
| SRR11670818 | 6 weeks | leaves | 1 |
| SRR11670819 | 6 weeks | leaves | 3 |
| Run | Tissue | Treatment | Replicate |
|---|---|---|---|
| SRR15205040 | Leaf | 1 day after rewatering | 1 |
| SRR15205041 | Leaf | 16 days after drought treatment | 3 |
| SRR15205042 | Leaf | 16 days after drought treatment | 2 |
| SRR15205043 | Leaf | 16 days after drought treatment | 1 |
| SRR15205044 | Leaf | 14 days after drought treatment | 3 |
| SRR15205045 | Leaf | 14 days after drought treatment | 2 |
| SRR15205046 | Leaf | 14 days after drought treatment | 1 |
| SRR15205047 | Leaf | control treatment | 3 |
| SRR15205048 | Leaf | 1 day after rewatering | 3 |
| SRR15205049 | Leaf | 1 day after rewatering | 2 |
| SRR15205050 | Leaf | control treatment | 2 |
| SRR15205051 | Leaf | control treatment | 1 |
| Run | Tissue | Treatment | Replicate |
|---|---|---|---|
| SRR18900247 | leaf | 1 day after rewatering | 1 |
| SRR18900248 | leaf | control treatment | 3 |
| SRR18900249 | leaf | control treatment | 2 |
| SRR18900250 | leaf | control treatment | 1 |
| SRR18900251 | leaf | 16 days after drought treatment | 3 |
| SRR18900252 | leaf | 16 days after drought treatment | 2 |
| SRR18900253 | leaf | 1 day after rewatering | 3 |
| SRR18900254 | leaf | 1 day after rewatering | 2 |
| SRR18900255 | leaf | 1 day after rewatering | 1 |
| SRR18900256 | leaf | control treatment | 3 |
| SRR18900257 | leaf | control treatment | 2 |
| SRR18900258 | leaf | control treatment | 1 |
| SRR18900259 | leaf | 16 days after drought treatment | 1 |
| SRR18900260 | leaf | 16 days after drought treatment | 3 |
| SRR18900261 | leaf | 16 days after drought treatment | 2 |
| SRR18900262 | leaf | 16 days after drought treatment | 1 |
| SRR18900263 | leaf | 14 days after drought treatment | 3 |
| SRR18900264 | leaf | 14 days after drought treatment | 2 |
| SRR18900265 | leaf | 14 days after drought treatment | 1 |
| SRR18900266 | leaf | 1 day after rewatering | 3 |
| SRR18900267 | leaf | 1 day after rewatering | 2 |
| SRR18900268 | leaf | 1 day after rewatering | 1 |
| SRR18900269 | leaf | control treatment | 3 |
| SRR18900270 | leaf | 14 days after drought treatment | 2 |
| SRR18900271 | leaf | control treatment | 2 |
| SRR18900272 | leaf | control treatment | 1 |
| SRR18900273 | leaf | 16 days after drought treatment | 3 |
| SRR18900274 | leaf | 16 days after drought treatment | 2 |
| SRR18900275 | leaf | 16 days after drought treatment | 1 |
| SRR18900276 | leaf | 14 days after drought treatment | 3 |
| SRR18900277 | leaf | 14 days after drought treatment | 2 |
| SRR18900278 | leaf | 14 days after drought treatment | 1 |
| SRR18900279 | leaf | 1 day after rewatering | 3 |
| SRR18900280 | leaf | 1 day after rewatering | 2 |
| SRR18900281 | leaf | 14 days after drought treatment | 2 |
| SRR18900282 | leaf | 14 days after drought treatment | 1 |
| Run | Accession | Tissue | Treatment |
|---|---|---|---|
| SRR6687579 | HP-34-3 | the first or second leaves | 16-19 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687580 | B1K-21-08 | the first or second leaves | 16-20 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687581 | HID-140 | the first or second leaves | 16-21 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687582 | HID-53 | the first or second leaves | 16-22 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687584 | HID-386 | the first or second leaves | 16-23 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687585 | not collected | the first or second leaves | 16-24 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687586 | HP-20-1 | the first or second leaves | 16-25 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687587 | B1K-41-03 | the first or second leaves | 16-26 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687588 | HID-138 | the first or second leaves | 16-27 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687589 | B1K-04-08 | the first or second leaves | 16-28 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687590 | B1K-49-18 | the first or second leaves | 16-29 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687591 | HID-145 | the first or second leaves | 16-30 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687592 | HID-149 | the first or second leaves | 16-31 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687593 | HID-310 | the first or second leaves | 16-32 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687594 | B1K-06-07 | the first or second leaves | 16-33 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687595 | B1K-34-04 | the first or second leaves | 16-34 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687596 | B1K-33-19 | the first or second leaves | 16-35 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687597 | B1K-36-05 | the first or second leaves | 16-36 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687598 | B1K-13-01 | the first or second leaves | 16-37 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687599 | HID-307 | the first or second leaves | 16-38 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687600 | HID-160 | the first or second leaves | 16-39 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687601 | B1K-21-20 | the first or second leaves | 16-40 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687602 | HID-230 | the first or second leaves | 16-41 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687603 | B1K-05-11 | the first or second leaves | 16-42 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687604 | HP-10-4 | the first or second leaves | 16-43 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687605 | B1K-04-13 | the first or second leaves | 16-44 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687606 | B1K-39-02 | the first or second leaves | 16-45 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687607 | B1K-39-20 | the first or second leaves | 16-46 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687608 | B1K-31-01 | the first or second leaves | 16-47 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687609 | B1K-27-02 | the first or second leaves | 16-48 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687610 | B1K-27-11 | the first or second leaves | 16-49 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687611 | B1K-35-04 | the first or second leaves | 16-50 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687612 | B1K-35-08 | the first or second leaves | 16-51 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687613 | HID-4 | the first or second leaves | 16-52 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687614 | HID-8-1 | the first or second leaves | 16-53 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687615 | B1K-29-20 | the first or second leaves | 16-54 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687616 | B1K-07-02 | the first or second leaves | 16-55 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687617 | HID-308 | the first or second leaves | 16-56 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687618 | HP-15-1 | the first or second leaves | 16-57 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687619 | B1K-28-10 | the first or second leaves | 16-58 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687620 | B1K-21-11 | the first or second leaves | 16-59 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687621 | B1K-15-07 | the first or second leaves | 16-60 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687622 | B1K-32-08 | the first or second leaves | 16-61 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687623 | HID-65 | the first or second leaves | 16-62 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687624 | B1K-12-06 | the first or second leaves | 16-63 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687625 | HID-104 | the first or second leaves | 16-64 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687627 | HID-213 | the first or second leaves | 16-65 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687628 | HID-302 | the first or second leaves | 16-66 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687633 | B1K-11-05 | the first or second leaves | 16-67 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687634 | HID-137 | the first or second leaves | 16-68 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| Run | Accession | Tissue | Treatment | Replicate |
|---|---|---|---|---|
| SRR13084408 | ICB181243 | Leaf 2 | control | replicate 2 |
| SRR13084409 | ICB181243 | Leaf 2 | control | replicate 1 |
| SRR13084410 | Scarlett | Leaf 2 | -0.8 MPa osmotic stress | replicate 4 |
| SRR13084411 | Scarlett | Leaf 2 | -0.8 MPa osmotic stress | replicate 3 |
| SRR13084412 | Scarlett | Leaf 2 | -0.8 MPa osmotic stress | replicate 2 |
| SRR13084413 | Scarlett | Leaf 2 | -0.8 MPa osmotic stress | replicate 1 |
| SRR13084414 | Scarlett | Leaf 2 | control | replicate 4 |
| SRR13084415 | Scarlett | Leaf 2 | control | replicate 3 |
| SRR13084416 | ICB181243 | Leaf 2 | -0.8 MPa osmotic stress | replicate 4 |
| SRR13084417 | ICB181243 | Leaf 2 | -0.8 MPa osmotic stress | replicate 3 |
| SRR13084418 | ICB181243 | Leaf 2 | -0.8 MPa osmotic stress | replicate 2 |
| SRR13084419 | ICB181243 | Leaf 2 | -0.8 MPa osmotic stress | replicate 1 |
| SRR13084420 | ICB181243 | Leaf 2 | control | replicate 4 |
| SRR13084421 | ICB181243 | Leaf 2 | control | replicate 3 |
| SRR13084422 | Scarlett | Leaf 2 | control | replicate 2 |
| SRR13084423 | Scarlett | Leaf 2 | control | replicate 1 |
| Run | Tissue | Treatment | Replicate |
|---|---|---|---|
| SRR1049570 | Leaf | salt stress treatment (500 mmol/L NaCl) was conducted on 14-day-old seedlings for 12 h | replicate 1 |
| SRR1049587 | Leaf | salt stress treatment (500 mmol/L NaCl) was conducted on 14-day-old seedlings for 2 h | replicate 2 |
| SRR1049609 | Leaf | salt stress treatment (500 mmol/L NaCl) was conducted on 14-day-old seedlings for 12 h | replicate 2 |
| SRR1049626 | Leaf | salt stress treatment (500 mmol/L NaCl) was conducted on 14-day-old seedlings for 12 h | replicate 3 |
| SRR1049643 | Leaf | salt stress treatment (500 mmol/L NaCl) was conducted on 14-day-old seedlings for 24 h | replicate 1 |
| SRR1049648 | Leaf | salt stress treatment (500 mmol/L NaCl) was conducted on 14-day-old seedlings for 24 h | replicate 2 |
| SRR1049655 | Leaf | salt stress treatment (500 mmol/L NaCl) was conducted on 14-day-old seedlings for 24 h | replicate 3 |
| SRR1028012 | Leaf | salt stress treatment (500 mmol/L NaCl) was conducted on 14-day-old seedlings for 0 (control) | replicate 3 |
| SRR1028011 | Leaf | salt stress treatment (500 mmol/L NaCl) was conducted on 14-day-old seedlings for 0 (control) | replicate 2 |
| SRR1055527 | Leaf | salt stress treatment (500 mmol/L NaCl) was conducted on 14-day-old seedlings for 2 h | replicate 1 |
| Run | Accession | Tissue | Treatment |
|---|---|---|---|
| SRR7817910 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under salt treatment for 24 h |
| SRR7817911 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under salt treatment for 24 h |
| SRR7817912 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under salt treatment for 24 h |
| SRR7817913 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under salt treatment for 6 h |
| SRR7817914 | Root | germplasm | Plant sample from Hordeum brevisubulatum under salt treatment for 6 h |
| SRR7817915 | Root | germplasm | Plant sample from Hordeum brevisubulatum under salt treatment for 24 h |
| SRR7817916 | Root | germplasm | Plant sample from Hordeum brevisubulatum under salt treatment for 6 h |
| SRR7817917 | Root | germplasm | Plant sample from Hordeum brevisubulatum under salt treatment for 6 h |
| SRR7817918 | Root | germplasm | Plant sample from Hordeum brevisubulatum under salt treatment for 1 h |
| SRR7817919 | Root | germplasm | Plant sample from Hordeum brevisubulatum under salt treatment for 1 h |
| SRR7817920 | Root | germplasm | Plant sample from Hordeum brevisubulatum under normal condition |
| SRR7817921 | Root | germplasm | Plant sample from Hordeum brevisubulatum under salt treatment for 1 h |
| SRR7817922 | Root | germplasm | Plant sample from Hordeum brevisubulatum under normal condition |
| SRR7817923 | Root | germplasm | Plant sample from Hordeum brevisubulatum under normal condition |
| SRR7817924 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under salt treatment for 1 h |
| SRR7817925 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under salt treatment for 1 h |
| SRR7817926 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under normal condition |
| SRR7817927 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under salt treatment for 1 h |
| SRR7817928 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under normal condition |
| SRR7817929 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under normal condition |
| SRR7817930 | Root | germplasm | Plant sample from Hordeum brevisubulatum under salt treatment for 24 h |
| SRR7817931 | Root | germplasm | Plant sample from Hordeum brevisubulatum under salt treatment for 24 h |
| SRR7817932 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under salt treatment for 6 h |
| SRR7817933 | Root | Zhongsi No.1 | Plant sample from Hordeum vulgare under salt treatment for 6 h |
| SRR6687604 | HP-10-4 | the first or second leaves | 16-43 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687605 | B1K-04-13 | the first or second leaves | 16-44 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687606 | B1K-39-02 | the first or second leaves | 16-45 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687608 | B1K-31-01 | the first or second leaves | 16-47 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687609 | B1K-27-02 | the first or second leaves | 16-48 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687610 | B1K-27-11 | the first or second leaves | 16-49 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687611 | B1K-35-04 | the first or second leaves | 16-50 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687612 | B1K-35-08 | the first or second leaves | 16-51 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687613 | HID-4 | the first or second leaves | 16-52 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687614 | HID-8-1 | the first or second leaves | 16-53 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687615 | B1K-29-20 | the first or second leaves | 16-54 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687616 | B1K-07-02 | the first or second leaves | 16-55 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687617 | HID-308 | the first or second leaves | 16-56 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687618 | HP-15-1 | the first or second leaves | 16-57 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687619 | B1K-28-10 | the first or second leaves | 16-58 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687620 | B1K-21-11 | the first or second leaves | 16-59 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687621 | B1K-15-07 | the first or second leaves | 16-60 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687622 | B1K-32-08 | the first or second leaves | 16-61 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687623 | HID-65 | the first or second leaves | 16-62 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687624 | B1K-12-06 | the first or second leaves | 16-63 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687625 | HID-104 | the first or second leaves | 16-64 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687627 | HID-213 | the first or second leaves | 16-65 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687628 | HID-302 | the first or second leaves | 16-66 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687633 | B1K-11-05 | the first or second leaves | 16-67 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| SRR6687634 | HID-137 | the first or second leaves | 16-68 hours after inoculation with Blumeria graminis f. sp. hordei (Bgh) conidiospores |
| Run | Accession | Treatment | Replicate |
|---|---|---|---|
| SRR9077061 | ICB181243 | seminal root Stress -0.8 MPa Zone A1 (osmotic stress ) | 1 |
| SRR9077062 | ICB181243 | seminal root Stress -0.8 MPa Zone A2 (osmotic stress ) | 2 |
| SRR9077063 | ICB181243 | seminal root Control Zone C3 | 3 |
| SRR9077064 | ICB181243 | seminal root Control Zone C4 | 4 |
| SRR9077065 | ICB181243 | seminal root Stress -0.8 MPa Zone C4 (osmotic stress ) | 4 |
| SRR9077066 | ICB181243 | seminal root Stress -0.8 MPa Zone C3 (osmotic stress ) | 3 |
| SRR9077067 | ICB181243 | seminal root Stress -0.8 MPa Zone C2 (osmotic stress ) | 2 |
| SRR9077068 | ICB181243 | seminal root Stress -0.8 MPa Zone C1 (osmotic stress ) | 1 |
| SRR9077069 | ICB181243 | seminal root Control Zone B3 | 3 |
| SRR9077070 | ICB181243 | seminal root Control Zone B4 | 4 |
| SRR9077071 | ICB181243 | seminal root Control Zone B1 | 1 |
| SRR9077072 | ICB181243 | seminal root Control Zone B2 | 2 |
| SRR9077073 | ICB181243 | seminal root Control Zone A3 | 3 |
| SRR9077074 | ICB181243 | seminal root Control Zone A4 | 4 |
| SRR9077075 | ICB181243 | seminal root Control Zone A1 | 1 |
| SRR9077076 | ICB181243 | seminal root Control Zone A2 | 2 |
| SRR9077077 | ICB181243 | seminal root Control Zone C1 | 1 |
| SRR9077078 | ICB181243 | seminal root Control Zone C2 | 2 |
| SRR9077079 | ICB181243 | seminal root Stress -0.8 MPa Zone B3 (osmotic stress ) | 3 |
| SRR9077080 | ICB181243 | seminal root Stress -0.8 MPa Zone B4 (osmotic stress ) | 4 |
| SRR9077081 | ICB181243 | seminal root Stress -0.8 MPa Zone B1 (osmotic stress ) | 1 |
| SRR9077082 | ICB181243 | seminal root Stress -0.8 MPa Zone B2 (osmotic stress ) | 2 |
| SRR9077083 | ICB181243 | seminal root Stress -0.8 MPa Zone A3 (osmotic stress ) | 3 |
| SRR9077084 | ICB181243 | seminal root Stress -0.8 MPa Zone A4 (osmotic stress ) | 4 |
| Run | Tissue | Lat_Lon | Treatment | Replicate |
|---|---|---|---|---|
| SRR14492484 | Leaf | 29.41 N 91.10 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 72 hpi. | replicate1 |
| SRR14492485 | Leaf | 29.41 N 91.9 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 36 hpi. | replicate3 |
| SRR14492486 | Leaf | 29.41 N 91.8 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 36 hpi. | replicate2 |
| SRR14492487 | Leaf | 29.41 N 91.7 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 36 hpi. | replicate1 |
| SRR14492488 | Leaf | 29.41 N 91.6 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 6 hpi. | replicate3 |
| SRR14492489 | Leaf | 29.41 N 91.5 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 6 hpi. | replicate2 |
| SRR14492490 | Leaf | 29.41 N 91.4 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 6 hpi. | replicate1 |
| SRR14492491 | Leaf | 29.41 N 91.30 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 168 hpi. | replicate3 |
| SRR14492492 | Leaf | 29.41 N 91.29 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 168 hpi. | replicate2 |
| SRR14492493 | Leaf | 29.41 N 91.28 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 168 hpi. | replicate1 |
| SRR14492494 | Leaf | 29.41 N 91.27 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 72 hpi. | replicate3 |
| SRR14492495 | Leaf | 29.41 N 91.26 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 72 hpi. | replicate2 |
| SRR14492496 | Leaf | 29.41 N 91.25 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 72 hpi. | replicate1 |
| SRR14492497 | Leaf | 29.41 N 91.24 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 36 hpi. | replicate3 |
| SRR14492498 | Leaf | 29.41 N 91.23 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 36 hpi. | replicate2 |
| SRR14492499 | Leaf | 29.41 N 91.22 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 36 hpi. | replicate1 |
| SRR14492500 | Leaf | 29.41 N 91.21 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 6 hpi. | replicate3 |
| SRR14492501 | Leaf | 29.41 N 91.3 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 0 hpi. | replicate3 |
| SRR14492502 | Leaf | 29.41 N 91.20 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 6 hpi. | replicate2 |
| SRR14492503 | Leaf | 29.41 N 91.19 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 6 hpi. | replicate1 |
| SRR14492504 | Leaf | 29.41 N 91.18 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 0 hpi. | replicate3 |
| SRR14492505 | Leaf | 29.41 N 91.17 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 0 hpi. | replicate2 |
| SRR14492506 | Leaf | 29.41 N 91.16 E | Twenty-day-old seedlings of resistant cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 0 hpi. | replicate1 |
| SRR14492507 | Leaf | 29.41 N 91.15 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 168 hpi. | replicate3 |
| SRR14492508 | Leaf | 29.41 N 91.14 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 168 hpi. | replicate2 |
| SRR14492509 | Leaf | 29.41 N 91.13 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 168 hpi. | replicate1 |
| SRR14492510 | Leaf | 29.41 N 91.12 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 72 hpi. | replicate3 |
| SRR14492511 | Leaf | 29.41 N 91.11 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 72 hpi. | replicate2 |
| SRR14492512 | Leaf | 29.41 N 91.2 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 0 hpi. | replicate2 |
| SRR14492513 | Leaf | 29.41 N 91.1 E | Twenty-day-old seedlings of susceptible cultivated qingke accession were infected with the Bgh race and the disease phenotype and symptoms were monitored at 0 hpi. | replicate1 |
| Run | Tissue | Treatment | Replicate |
|---|---|---|---|
| SRR9201534 | Root | CK | replicate 1 |
| SRR9201535 | Root | CK | replicate 2 |
| SRR9201536 | Root | CK | replicate 3 |
| SRR9201537 | Root | SALT | replicate 1 |
| SRR9201538 | Root | SALT | replicate 2 |
| SRR9201539 | Root | SALT | replicate 3 |
| SRR9201546 | Shoot | CK | replicate 1 |
| SRR9201547 | Shoot | CK | replicate 2 |
| SRR9201548 | Shoot | CK | replicate 3 |
| SRR9201549 | Shoot | SALT | replicate 1 |
| SRR9201550 | Shoot | SALT | replicate 2 |
| SRR9201551 | Shoot | SALT | replicate 3 |
| Run | Accession | Tissue | Treatment | Replicate |
|---|---|---|---|---|
| ERR1994852 | Morex | shoot | The chamber was set to cycle between 20oC for 12 hours and 18oC for the next 12 hours, and the soil was kept moist by gently spraying with water every 72 hours. Sampling was done at 10 am under light. | 1 |
| ERR1994853 | Morex | shoot | The chamber was set to cycle between 20oC for 12 hours and 18oC for the next 12 hours, and the soil was kept moist by gently spraying with water every 72 hours. Sampling was done at 10 am under light. | 2 |
| ERR1994854 | Morex | shoot | The chamber was set to cycle between 20oC for 12 hours and 18oC for the next 12 hours, and the soil was kept moist by gently spraying with water every 72 hours. Sampling was done at 10 am under light. | 3 |
| ERR1994855 | Morex | shoot | The chamber was set to cycle between 20oC for 12 hours and 18oC for the next 12 hours, and the soil was kept moist by gently spraying with water every 72 hours. Sampling was done at about 7.30 pm under green lights. | 1 |
| ERR1994856 | Morex | shoot | The chamber was set to cycle between 20oC for 12 hours and 18oC for the next 12 hours, and the soil was kept moist by gently spraying with water every 72 hours. Sampling was done at about 7.30 pm under green lights. | 2 |
| ERR1994857 | Morex | shoot | The chamber was set to cycle between 20oC for 12 hours and 18oC for the next 12 hours, and the soil was kept moist by gently spraying with water every 72 hours. Sampling was done at about 7.30 pm under green lights. | 3 |
| Run | Accession | Tissue |
|---|---|---|
| ERR8105249 | HEB15_124_52 | root structure |
| ERR8105250 | HEB15_124_17 | root structure |
| ERR8105251 | Barke | root structure |
| ERR8105252 | HEB15_124_52 | root structure |
| ERR8105253 | Barke | root structure |
| ERR8105254 | HEB15_124_17 | root structure |
| ERR8105255 | Barke | root structure |
| ERR8105256 | HEB15_124_17 | root structure |
| ERR8105257 | HEB15_124_52 | root structure |
| ERR8105258 | HEB15_124_52 | root structure |
| ERR8105259 | HEB15_124_17 | root structure |
| ERR8105260 | HEB15_124_17 | root structure |
| ERR8105261 | Barke | root structure |
| ERR8105262 | HEB15_124_52 | root structure |
| ERR8105263 | Barke | root structure |
| Run | Stage | Treatment |
|---|---|---|
| SRR16989364 | three-leaf stage | Barcult2(control) |
| SRR16989365 | three-leaf stage | Barcult1(control) |
| SRR16989366 | three-leaf stage | Barcult2(Salt-treated) |
| SRR16989367 | three-leaf stage | Barcult1(Salt-treated) |
| SRR16989368 | three-leaf stage | Barspon2(control) |
| SRR16989369 | three-leaf stage | Barspon1(control) |
| SRR16989370 | three-leaf stage | Barspon2(Salt-treated) |
| SRR16989371 | three-leaf stage | Barspon1(Salt-treated) |
| Run | Accession | Stage | Tissue | Replicate |
|---|---|---|---|---|
| ERR9218703 | Bowman | Maximum yield potential | Apical | biorep1 |
| ERR9218704 | Bowman | Maximum yield potential | Apical | biorep2 |
| ERR9218705 | Bowman | Maximum yield potential | Apical | biorep3 |
| ERR9218706 | Bowman | W6.5 | Apical | biorep1 |
| ERR9218707 | Bowman | W6.5 | Apical | biorep2 |
| ERR9218708 | Bowman | W6.5 | Apical | biorep3 |
| ERR9218709 | Bowman | Abortion initation stage | Apical | biorep1 |
| ERR9218710 | Bowman | Abortion initation stage | Apical | biorep2 |
| ERR9218711 | Bowman | Abortion initation stage | Apical | biorep3 |
| ERR9218712 | Bowman | Maximum yield potential | Central | biorep1 |
| ERR9218713 | Bowman | Maximum yield potential | Central | biorep2 |
| ERR9218714 | Bowman | Maximum yield potential | Central | biorep3 |
| ERR9218715 | Bowman | W6.5 | Central | biorep1 |
| ERR9218716 | Bowman | W6.5 | Central | biorep2 |
| ERR9218717 | Bowman | W6.5 | Central | biorep3 |
| ERR9218718 | Bowman | Abortion initation stage | Central | biorep1 |
| ERR9218719 | Bowman | Abortion initation stage | Central | biorep2 |
| ERR9218720 | Bowman | Abortion initation stage | Central | biorep3 |
| ERR9218721 | Bowman | Maximum yield potential | Basal | biorep1 |
| ERR9218722 | Bowman | Maximum yield potential | Basal | biorep2 |
| ERR9218723 | Bowman | Maximum yield potential | Basal | biorep3 |
| ERR9218724 | Bowman | W6.5 | Basal | biorep1 |
| ERR9218725 | Bowman | W6.5 | Basal | biorep2 |
| ERR9218726 | Bowman | W6.5 | Basal | biorep3 |
| ERR9218727 | Bowman | Abortion initation stage | Basal | biorep1 |
| ERR9218728 | Bowman | Abortion initation stage | Basal | biorep2 |
| ERR9218729 | Bowman | Abortion initation stage | Basal | biorep3 |
| ERR9218730 | Morex | Maximum yield potential | Apical | biorep1 |
| ERR9218731 | Morex | Maximum yield potential | Apical | biorep2 |
| ERR9218732 | Morex | Maximum yield potential | Apical | biorep3 |
| ERR9218733 | Morex | W6.5 | Apical | biorep1 |
| ERR9218734 | Morex | W6.5 | Apical | biorep2 |
| ERR9218735 | Morex | W6.5 | Apical | biorep3 |
| ERR9218736 | Morex | Abortion initation stage | Apical | biorep1 |
| ERR9218737 | Morex | Abortion initation stage | Apical | biorep2 |
| ERR9218738 | Morex | Abortion initation stage | Apical | biorep3 |
| ERR9218739 | Morex | Maximum yield potential | Central | biorep1 |
| ERR9218740 | Morex | Maximum yield potential | Central | biorep2 |
| ERR9218741 | Morex | Maximum yield potential | Central | biorep3 |
| ERR9218742 | Morex | W6.5 | Central | biorep1 |
| ERR9218743 | Morex | W6.5 | Central | biorep2 |
| ERR9218744 | Morex | W6.5 | Central | biorep3 |
| ERR9218745 | Morex | Abortion initation stage | Central | biorep1 |
| ERR9218746 | Morex | Abortion initation stage | Central | biorep2 |
| ERR9218747 | Morex | Abortion initation stage | Central | biorep3 |
| ERR9218748 | Morex | Maximum yield potential | Basal | biorep1 |
| ERR9218749 | Morex | Maximum yield potential | Basal | biorep2 |
| ERR9218750 | Morex | Maximum yield potential | Basal | biorep3 |
| ERR9218751 | Morex | W6.5 | Basal | biorep1 |
| ERR9218752 | Morex | W6.5 | Basal | biorep2 |
| ERR9218753 | Morex | W6.5 | Basal | biorep3 |
| ERR9218754 | Morex | Abortion initation stage | Basal | biorep1 |
| ERR9218755 | Morex | Abortion initation stage | Basal | biorep2 |
| ERR9218756 | Morex | Abortion initation stage | Basal | biorep3 |
| Run | Tissue | Treatment | Replicate |
|---|---|---|---|
| SRR17234918 | leaf | cold stress 0h-1 | 1 |
| SRR17234917 | leaf | cold stress 0h-1 | 2 |
| SRR17234916 | leaf | cold stress 0h-1 | 3 |
| SRR17200387 | leaf | cold stress 168h | 1 |
| SRR17200386 | leaf | cold stress 168h | 2 |
| SRR17200385 | leaf | cold stress 168h | 3 |
| SRR17200390 | leaf | cold stress 24h | 1 |
| SRR17200389 | leaf | cold stress 24h | 2 |
| SRR17200388 | leaf | cold stress 24h | 3 |
| SRR17200394 | leaf | cold stress 2h | 1 |
| SRR17200393 | leaf | cold stress 2h | 2 |
| SRR17200391 | leaf | cold stress 2h | 3 |
| Run | Accession | Tissue | Replicate |
|---|---|---|---|
| SRR15722930 | Hu 1154 | lodicule4 | 1 |
| SRR15722931 | Hu 1154 | lodicule3 | 3 |
| SRR15722932 | Hu 1154 | lodicule3 | 2 |
| SRR15722933 | Hu 1154 | lodicule3 | 1 |
| SRR15722934 | Hu 1154 | lodicule2 | 3 |
| SRR15722935 | Hu 1154 | lodicule2 | 2 |
| SRR15722936 | Hu 1154 | lodicule2 | 1 |
| SRR15722937 | Hu 1154 | lodicule | 1 |
| SRR15722938 | Hu 1154 | pistils | 3 |
| SRR15722939 | Hu 1154 | pistils | 2 |
| SRR15722940 | Hu 1154 | pistils | 1 |
| SRR15722941 | Hu 1154 | anthers | 1 |
| SRR15722942 | Hu 1154 | glumes | 3 |
| SRR15722943 | Hu 1154 | rachises | 1 |
| SRR15722944 | Hu 1154 | leaves | 1 |
| SRR15722945 | Hu 1154 | stems | 3 |
| SRR15722946 | Hu 1154 | lodicule1 | 3 |
| SRR15722947 | Hu 1154 | stems | 1 |
| SRR15722948 | Hu 1154 | roots | 3 |
| SRR15722949 | Hu 1154 | lodicule6 | 3 |
| SRR15722950 | Hu 1154 | lodicule6 | 2 |
| SRR15722951 | Hu 1154 | lodicule6 | 1 |
| SRR15722952 | Hu 1154 | lodicule5 | 3 |
| SRR15722953 | Hu 1154 | lodicule5 | 2 |
| SRR15722954 | Hu 1154 | lodicule5 | 1 |
| SRR15722955 | Hu 1154 | lodicule4 | 3 |
| SRR15722956 | Hu 1154 | lodicule4 | 2 |
| SRR15722957 | Hu 1154 | lodicule1 | 2 |
| SRR15722958 | Hu 1154 | lodicule1 | 1 |
| Run | Accession | Tissue | Treatment | Replicate |
|---|---|---|---|---|
| ERR3564252 | Bowman | leaf | light_20℃_0h | 1 |
| ERR3564253 | Bowman | leaf | light_20℃_0h | 2 |
| ERR3564254 | Bowman | leaf | light_20℃_12h | 1 |
| ERR3564255 | Bowman | leaf | light_20℃_12h | 2 |
| ERR3564256 | Bowman | leaf | dark_18℃_14h | 1 |
| ERR3564257 | Bowman | leaf | dark_18℃_14h | 2 |
| ERR3564258 | Bowman | leaf | dark_18℃_16h | 1 |
| ERR3564259 | Bowman | leaf | dark_18℃_16h | 2 |
| ERR3564260 | Bowman | leaf | light_20℃_2h | 1 |
| ERR3564261 | Bowman | leaf | light_20℃_2h | 2 |
| ERR3564262 | Bowman | leaf | dark_18℃_20h | 1 |
| ERR3564263 | Bowman | leaf | dark_18℃_20h | 2 |
| ERR3564264 | Bowman | leaf | dark_18℃_24h | 1 |
| ERR3564265 | Bowman | leaf | dark_18℃_24h | 2 |
| ERR3564266 | Bowman | leaf | continuous light regimen_20℃_36h | 1 |
| ERR3564267 | Bowman | leaf | continuous light regimen_20℃_36h | 2 |
| ERR3564268 | Bowman | leaf | light_20℃_4h | 1 |
| ERR3564269 | Bowman | leaf | light_20℃_4h | 2 |
| ERR3564270 | Bowman | leaf | continuous light regimen_20℃_40h | 1 |
| ERR3564271 | Bowman | leaf | continuous light regimen_20℃_40h | 2 |
| ERR3564272 | Bowman | leaf | continuous light regimen_20℃_44h | 1 |
| ERR3564273 | Bowman | leaf | continuous light regimen_20℃_44h | 2 |
| ERR3564274 | Bowman | leaf | continuous light regimen_20℃_48h | 1 |
| ERR3564275 | Bowman | leaf | continuous light regimen_20℃_48h | 2 |
| ERR3564276 | Bowman | leaf | continuous light regimen_20℃_52h | 1 |
| ERR3564277 | Bowman | leaf | continuous light regimen_20℃_52h | 2 |
| ERR3564278 | Bowman | leaf | continuous light regimen_20℃_56h | 1 |
| ERR3564279 | Bowman | leaf | continuous light regimen_20℃_56h | 2 |
| ERR3564280 | Bowman | leaf | continuous light regimen_20℃_60h | 1 |
| ERR3564281 | Bowman | leaf | continuous light regimen_20℃_60h | 2 |
| ERR3564282 | Bowman | leaf | continuous light regimen_20℃_64h | 1 |
| ERR3564283 | Bowman | leaf | continuous light regimen_20℃_64h | 2 |
| ERR3564284 | Bowman | leaf | continuous light regimen_20℃_68h | 1 |
| ERR3564285 | Bowman | leaf | continuous light regimen_20℃_68h | 2 |
| ERR3564286 | Bowman | leaf | continuous light regimen_20℃_72h | 1 |
| ERR3564287 | Bowman | leaf | continuous light regimen_20℃_72h | 2 |
| ERR3564288 | Bowman | leaf | light_20℃_8h | 1 |
| ERR3564289 | Bowman | leaf | light_20℃_8h | 2 |
| ERR3564290 | BW284 | leaf | light_20℃_0h | 1 |
| ERR3564291 | BW284 | leaf | light_20℃_0h | 2 |
| ERR3564292 | BW284 | leaf | light_20℃_2h | 1 |
| ERR3564293 | BW284 | leaf | light_20℃_2h | 2 |
| ERR3564294 | BW284 | leaf | light_20℃_4h | 1 |
| ERR3564295 | BW284 | leaf | light_20℃_4h | 2 |
| ERR3564296 | BW284 | leaf | light_20℃_8h | 1 |
| ERR3564297 | BW284 | leaf | light_20℃_8h | 2 |
| ERR3564298 | BW284 | leaf | light_20℃_12h | 1 |
| ERR3564299 | BW284 | leaf | light_20℃_12h | 2 |
| ERR3564300 | BW284 | leaf | dark_18℃_16h | 1 |
| ERR3564301 | BW284 | leaf | dark_18℃_16h | 2 |
| ERR3564302 | BW284 | leaf | dark_18℃_20h | 1 |
| ERR3564303 | BW284 | leaf | dark_18℃_20h | 2 |
| ERR3564304 | BW284 | leaf | dark_18℃_24h | 1 |
| ERR3564305 | BW284 | leaf | dark_18℃_24h | 2 |
| ERR3564306 | BW284 | leaf | continuous light regimen_20℃_36h | 1 |
| ERR3564307 | BW284 | leaf | continuous light regimen_20℃_36h | 2 |
| ERR3564308 | BW284 | leaf | continuous light regimen_20℃_40h | 1 |
| ERR3564309 | BW284 | leaf | continuous light regimen_20℃_40h | 2 |
| ERR3564310 | BW284 | leaf | continuous light regimen_20℃_44h | 1 |
| ERR3564311 | BW284 | leaf | continuous light regimen_20℃_44h | 2 |
| ERR3564312 | BW284 | leaf | continuous light regimen_20℃_48h | 1 |
| ERR3564313 | BW284 | leaf | continuous light regimen_20℃_48h | 2 |
| ERR3564314 | BW284 | leaf | continuous light regimen_20℃_52h | 1 |
| ERR3564315 | BW284 | leaf | continuous light regimen_20℃_52h | 2 |
| ERR3564316 | BW284 | leaf | continuous light regimen_20℃_56h | 1 |
| ERR3564317 | BW284 | leaf | continuous light regimen_20℃_56h | 2 |
| ERR3564318 | BW284 | leaf | continuous light regimen_20℃_60h | 1 |
| ERR3564319 | BW284 | leaf | continuous light regimen_20℃_60h | 2 |
| ERR3564320 | BW284 | leaf | continuous light regimen_20℃_64h | 1 |
| ERR3564321 | BW284 | leaf | continuous light regimen_20℃_64h | 2 |
| ERR3564322 | BW284 | leaf | continuous light regimen_20℃_68h | 1 |
| ERR3564323 | BW284 | leaf | continuous light regimen_20℃_68h | 2 |
| ERR3564324 | BW284 | leaf | continuous light regimen_20℃_72h | 1 |
| ERR3564325 | BW284 | leaf | continuous light regimen_20℃_72h | 2 |
| ERR3564326 | BW287 | leaf | light_20℃_0h | 1 |
| ERR3564327 | BW287 | leaf | light_20℃_0h | 2 |
| ERR3564328 | BW287 | leaf | light_20℃_2h | 1 |
| ERR3564329 | BW287 | leaf | light_20℃_2h | 2 |
| ERR3564330 | BW287 | leaf | light_20℃_4h | 1 |
| ERR3564331 | BW287 | leaf | light_20℃_4h | 2 |
| ERR3564332 | BW287 | leaf | light_20℃_8h | 1 |
| ERR3564333 | BW287 | leaf | light_20℃_8h | 2 |
| ERR3564334 | BW287 | leaf | light_20℃_12h | 1 |
| ERR3564335 | BW287 | leaf | light_20℃_12h | 2 |
| ERR3564336 | BW287 | leaf | dark_18℃_16h | 1 |
| ERR3564337 | BW287 | leaf | dark_18℃_16h | 2 |
| ERR3564338 | BW287 | leaf | dark_18℃_20h | 1 |
| ERR3564339 | BW287 | leaf | dark_18℃_20h | 2 |
| ERR3564340 | BW287 | leaf | dark_18℃_24h | 1 |
| ERR3564341 | BW287 | leaf | dark_18℃_24h | 2 |
| ERR3564342 | BW287 | leaf | continuous light regimen_20℃_36h | 1 |
| ERR3564343 | BW287 | leaf | continuous light regimen_20℃_36h | 2 |
| ERR3564344 | BW287 | leaf | continuous light regimen_20℃_40h | 1 |
| ERR3564345 | BW287 | leaf | continuous light regimen_20℃_40h | 2 |
| ERR3564346 | BW287 | leaf | continuous light regimen_20℃_44h | 1 |
| ERR3564347 | BW287 | leaf | continuous light regimen_20℃_44h | 2 |
| ERR3564348 | BW287 | leaf | continuous light regimen_20℃_48h | 1 |
| ERR3564349 | BW287 | leaf | continuous light regimen_20℃_48h | 2 |
| ERR3564350 | BW287 | leaf | continuous light regimen_20℃_52h | 1 |
| ERR3564351 | BW287 | leaf | continuous light regimen_20℃_52h | 2 |
| ERR3564352 | BW287 | leaf | continuous light regimen_20℃_56h | 1 |
| ERR3564353 | BW287 | leaf | continuous light regimen_20℃_56h | 2 |
| ERR3564354 | BW287 | leaf | continuous light regimen_20℃_60h | 1 |
| ERR3564355 | BW287 | leaf | continuous light regimen_20℃_60h | 2 |
| ERR3564356 | BW287 | leaf | continuous light regimen_20℃_64h | 1 |
| ERR3564357 | BW287 | leaf | continuous light regimen_20℃_64h | 2 |
| ERR3564358 | BW287 | leaf | continuous light regimen_20℃_68h | 1 |
| ERR3564359 | BW287 | leaf | continuous light regimen_20℃_68h | 2 |
| ERR3564360 | BW287 | leaf | continuous light regimen_20℃_72h | 1 |
| ERR3564361 | BW287 | leaf | continuous light regimen_20℃_72h | 2 |
| ERR3564362 | BW290 | leaf | light_20℃_0h | 1 |
| ERR3564363 | BW290 | leaf | light_20℃_0h | 2 |
| ERR3564364 | BW290 | leaf | light_20℃_12h | 1 |
| ERR3564365 | BW290 | leaf | light_20℃_12h | 2 |
| ERR3564366 | BW290 | leaf | dark_18℃_16h | 1 |
| ERR3564367 | BW290 | leaf | dark_18℃_16h | 2 |
| ERR3564368 | BW290 | leaf | light_20℃_2h | 1 |
| ERR3564369 | BW290 | leaf | light_20℃_2h | 2 |
| ERR3564370 | BW290 | leaf | dark_18℃_20h | 1 |
| ERR3564371 | BW290 | leaf | dark_18℃_20h | 2 |
| ERR3564372 | BW290 | leaf | dark_18℃_24h | 1 |
| ERR3564373 | BW290 | leaf | dark_18℃_24h | 2 |
| ERR3564374 | BW290 | leaf | continuous light regimen_20℃_36h | 1 |
| ERR3564375 | BW290 | leaf | continuous light regimen_20℃_36h | 2 |
| ERR3564376 | BW290 | leaf | light_20℃_4h | 1 |
| ERR3564377 | BW290 | leaf | light_20℃_4h | 2 |
| ERR3564378 | BW290 | leaf | continuous light regimen_20℃_40h | 1 |
| ERR3564379 | BW290 | leaf | continuous light regimen_20℃_40h | 2 |
| ERR3564380 | BW290 | leaf | continuous light regimen_20℃_44h | 1 |
| ERR3564381 | BW290 | leaf | continuous light regimen_20℃_44h | 2 |
| ERR3564382 | BW290 | leaf | continuous light regimen_20℃_48h | 1 |
| ERR3564383 | BW290 | leaf | continuous light regimen_20℃_48h | 2 |
| ERR3564384 | BW290 | leaf | continuous light regimen_20℃_52h | 1 |
| ERR3564385 | BW290 | leaf | continuous light regimen_20℃_52h | 2 |
| ERR3564386 | BW290 | leaf | continuous light regimen_20℃_56h | 1 |
| ERR3564387 | BW290 | leaf | continuous light regimen_20℃_56h | 2 |
| ERR3564388 | BW290 | leaf | continuous light regimen_20℃_60h | 1 |
| ERR3564389 | BW290 | leaf | continuous light regimen_20℃_60h | 2 |
| ERR3564390 | BW290 | leaf | continuous light regimen_20℃_64h | 1 |
| ERR3564391 | BW290 | leaf | continuous light regimen_20℃_64h | 2 |
| ERR3564392 | BW290 | leaf | continuous light regimen_20℃_68h | 1 |
| ERR3564393 | BW290 | leaf | continuous light regimen_20℃_68h | 2 |
| ERR3564394 | BW290 | leaf | continuous light regimen_20℃_72h | 1 |
| ERR3564395 | BW290 | leaf | continuous light regimen_20℃_72h | 2 |
| ERR3564396 | BW290 | leaf | light_20℃_8h | 1 |
| ERR3564397 | BW290 | leaf | light_20℃_8h | 2 |
| Run | Accession | Tissue | Treatment | Replicate |
|---|---|---|---|---|
| SRR12817183 | Bowman | Awn Primordium (W5) | AP_Bowman_3 | 3 |
| SRR12817186 | Bowman | Stamen primordium (W3.5) | StP_Bowman_3 | 3 |
| SRR12817189 | int-m.1a NIL | Stamen primordium (W3.5) | StP2_intm1a_3 | 3 |
| SRR12817192 | int-m.85 NIL | Stamen primordium (W3.5) | StP2_intm85_3 | 3 |
| SRR12817195 | Bowman | Stamen primordium (W3.5) | StP2_Bowman_3 | 3 |
| SRR12817197 | Bowman | Stamen primordium (W3.5) | StP2_Bowman_1 | 1 |
| SRR12817200 | int-m.85 NIL | Awn Primordium (W5) | AP_intm85_3 | 3 |
| SRR12817201 | int-m.85 NIL | Awn Primordium (W5) | AP_intm85_2 | 2 |
| SRR12817205 | int-m.85 NIL | Stamen primordium (W3.5) | StP_intm85_1 | 1 |
| SRR12817207 | int-m.85 NIL | double ridge (W2) | DR_intm85_2 | 2 |
| SRR12817209 | Bowman | Awn Primordium (W5) | AP_Bowman_4 | 4 |
| SRR12817211 | Bowman | double ridge (W2) | DR_Bowman_1 | 1 |
| SRR12823618 | int-m.85 NIL | double ridge (W2) | D12_intm85_3 | 3 |
| SRR12823619 | int-m.85 NIL | double ridge (W2) | D12_intm85_2 | 2 |
| SRR12823620 | int-m.85 NIL | double ridge (W2) | D12_intm85_1 | 1 |
| SRR12823621 | int-m.1a NIL | double ridge (W2) | D12_intm1a_4 | 4 |
| SRR12823622 | int-m.1a NIL | double ridge (W2) | D12_intm1a_3 | 3 |
| SRR12823623 | int-m.1a NIL | double ridge (W2) | D12_intm1a_2 | 2 |
| SRR12823624 | int-m.85 NIL | Stamen primordium (StP) | D21_intm85_4 | 4 |
| SRR12823625 | int-m.85 NIL | Stamen primordium (StP) | D21_intm85_3 | 3 |
| SRR12823626 | int-m.85 NIL | Stamen primordium (StP) | D21_intm85_2 | 2 |
| SRR12823627 | Bowman | double ridge (W2) | D12_Bowman_4 | 4 |
| SRR12823628 | int-m.85 NIL | Stamen primordium (StP) | D21_intm85_1 | 1 |
| SRR12823629 | int-m.1a NIL | Stamen primordium (StP) | D21_intm1a_4 | 4 |
| SRR12823630 | int-m.1a NIL | Stamen primordium (StP) | D21_intm1a_3 | 3 |
| SRR12823631 | int-m.1a NIL | Stamen primordium (StP) | D21_intm1a_2 | 2 |
| SRR12823632 | int-m.1a NIL | Stamen primordium (StP) | D21_intm1a_1 | 1 |
| SRR12823633 | Bowman | Stamen primordium (StP) | D21_Bowman_4 | 4 |
| SRR12823634 | Bowman | Stamen primordium (StP) | D21_Bowman_3 | 3 |
| SRR12823635 | Bowman | Stamen primordium (StP) | D21_Bowman_2 | 2 |
| SRR12823636 | Bowman | Stamen primordium (StP) | D21_Bowman_1 | 1 |
| SRR12823637 | int-m.85 NIL | Triple mound-spikelet meristem (TM-SM) | D16_intm85_4 | 4 |
| SRR12823638 | Bowman | double ridge (W2) | D12_Bowman_3 | 3 |
| SRR12823639 | int-m.85 NIL | Triple mound-spikelet meristem (TM-SM) | D16_intm85_3 | 3 |
| SRR12823640 | int-m.85 NIL | Triple mound-spikelet meristem (TM-SM) | D16_intm85_2 | 2 |
| SRR12823641 | int-m.85 NIL | Triple mound-spikelet meristem (TM-SM) | D16_intm85_1 | 1 |
| SRR12823642 | int-m.1a NIL | Triple mound-spikelet meristem (TM-SM) | D16_intm1a_4 | 4 |
| SRR12823643 | int-m.1a NIL | Triple mound-spikelet meristem (TM-SM) | D16_intm1a_3 | 3 |
| SRR12823644 | int-m.1a NIL | Triple mound-spikelet meristem (TM-SM) | D16_intm1a_2 | 2 |
| SRR12823645 | int-m.1a NIL | Triple mound-spikelet meristem (TM-SM) | D16_intm1a_1 | 1 |
| SRR12823646 | Bowman | Triple mound-spikelet meristem (TM-SM) | D16_Bowman_3 | 3 |
| SRR12823647 | Bowman | Triple mound-spikelet meristem (TM-SM) | D16_Bowman_1 | 1 |
| SRR12823648 | int-m.85 NIL | double ridge (W2) | D12_intm85_4 | 4 |
| SRR12823649 | Bowman | double ridge (W2) | D12_Bowman_2 | 2 |
| SRR12823650 | Bowman | double ridge (W2) | D12_Bowman_1 | 1 |
| SRR12817184 | Bowman | Awn Primordium (W5) | AP_Bowman_1 | 1 |
| SRR12817185 | Bowman | Stamen primordium (W3.5) | StP_Bowman_4 | 4 |
| SRR12817187 | Bowman | Stamen primordium (W3.5) | StP_Bowman_2 | 2 |
| SRR12817188 | Bowman | Stamen primordium (W3.5) | StP_Bowman_1 | 1 |
| SRR12817190 | int-m.1a NIL | Stamen primordium (W3.5) | StP2_intm1a_2 | 2 |
| SRR12817191 | int-m.1a NIL | Stamen primordium (W3.5) | StP2_intm1a_1 | 1 |
| SRR12817193 | int-m.85 NIL | Stamen primordium (W3.5) | StP2_intm85_2 | 2 |
| SRR12817194 | int-m.85 NIL | Stamen primordium (W3.5) | StP2_intm85_1 | 1 |
| SRR12817196 | Bowman | Stamen primordium (W3.5) | StP2_Bowman_2 | 2 |
| SRR12817198 | Bowman | double ridge (W2) | DR_Bowman_3 | 3 |
| SRR12817199 | Bowman | Awn Primordium (W5) | AP_Bowman_2 | 2 |
| SRR12817202 | int-m.85 NIL | Awn Primordium (W5) | AP_intm85_1 | 1 |
| SRR12817203 | int-m.85 NIL | Stamen primordium (W3.5) | StP_intm85_3 | 3 |
| SRR12817204 | int-m.85 NIL | Stamen primordium (W3.5) | StP_intm85_2 | 2 |
| SRR12817206 | int-m.85 NIL | double ridge (W2) | DR_intm85_3 | 3 |
| SRR12817208 | int-m.85 NIL | double ridge (W2) | DR_intm85_1 | 1 |
| SRR12817210 | Bowman | double ridge (W2) | DR_Bowman_2 | 2 |